Index of /10.11582_2022.00010/simulations_analyses/MD_simulations/pi_plc_dmpg_100_1st_run/scr

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]0_50_ns_wrapped.dcd2013-07-01 09:49 5.2G 
[ ]0_50_ns_wrapped.dcd.md52021-12-13 01:02 32  
[ ]0_50_ns_wrapped_protmemb.dcd2013-07-01 09:55 1.8G 
[ ]0_50_ns_wrapped_protmemb.dcd.md52021-12-13 01:00 32  
[ ]0_50_ns_wrapped_protmemb_truncated_to_visualize.dcd2013-07-08 14:29 19M 
[ ]0_50_ns_wrapped_protmemb_truncated_to_visualize.dcd.md52021-12-13 01:01 32  
[ ]0_50_ns_wrapped_protmemb_truncated_to_visualize_2.dcd2013-07-08 14:30 187M 
[ ]0_50_ns_wrapped_protmemb_truncated_to_visualize_2.dcd.md52021-12-13 01:01 32  
[TXT]1_build.inp2013-05-28 15:51 4.5K 
[ ]1_build.inp.md52021-12-13 01:00 32  
[ ]1_build.out2013-05-28 15:39 2.7M 
[ ]1_build.out.md52021-12-13 01:00 32  
[ ]1_build_del_memb.out2013-05-28 15:57 2.7M 
[ ]1_build_del_memb.out.md52021-12-13 01:04 32  
[TXT]2_minimise.inp2013-05-28 15:53 7.8K 
[ ]2_minimise.inp.md52021-12-13 01:06 32  
[ ]2_minimise.out2013-05-29 05:30 50M 
[ ]2_minimise.out.md52021-12-13 01:03 32  
[TXT]3_createWaterBox.vmd2013-05-29 11:52 1.4K 
[ ]3_createWaterBox.vmd.md52021-12-13 01:01 32  
[TXT]4_build_after_solvate.inp2013-05-29 12:17 3.8K 
[ ]4_build_after_solvate.inp.md52021-12-13 01:01 32  
[ ]4_build_after_solvate.out2013-05-29 12:24 1.8M 
[ ]4_build_after_solvate.out.md52021-12-13 01:04 32  
[ ]51_100_ns_wrapped.dcd2013-06-04 13:05 5.2G 
[ ]51_100_ns_wrapped.dcd.md52021-12-13 01:03 32  
[ ]51_100_ns_wrapped_protmemb.dcd2013-06-24 14:18 1.8G 
[ ]51_100_ns_wrapped_protmemb.dcd.md52021-12-13 01:03 32  
[ ]FLOP_0_50_ns_last_frame.pdb2013-07-26 14:09 7.0M 
[ ]FLOP_0_50_ns_last_frame.pdb.md52021-12-13 01:06 32  
[ ]FLOP_500_ns_last_frame_DMPG_1st_sim.pdb2013-08-05 09:28 7.0M 
[ ]FLOP_500_ns_last_frame_DMPG_1st_sim.pdb.md52021-12-13 01:06 32  
[ ]FLOP_detachment_chk_frame_4950_0_50_ns.pdb2013-07-26 14:05 7.0M 
[ ]FLOP_detachment_chk_frame_4950_0_50_ns.pdb.md52021-12-13 01:01 32  
[ ]FLOP_pi_plc_pcpg_50_50_prod9_last_frame_for_lipid_jump_chk.pdb2013-06-24 15:29 7.3M 
[ ]FLOP_pi_plc_pcpg_50_50_prod9_last_frame_for_lipid_jump_chk.pdb.md52021-12-13 01:00 32  
[ ]FLOP_prod1_last_frame.pdb2013-06-01 13:05 7.0M 
[ ]FLOP_prod1_last_frame.pdb.md52021-12-13 01:05 32  
[ ]FLOP_prod2_last_frame.pdb2013-06-04 12:45 7.0M 
[ ]FLOP_prod2_last_frame.pdb.md52021-12-13 01:03 32  
[ ]FLOP_prod3_last_frame.pdb2013-06-28 15:07 7.0M 
[ ]FLOP_prod3_last_frame.pdb.md52021-12-13 01:06 32  
[ ]FLOP_prod4_last_frame.pdb2013-06-19 09:59 7.0M 
[ ]FLOP_prod4_last_frame.pdb.md52021-12-13 01:00 32  
[ ]FLOP_prod5_last_frame.pdb2013-06-19 09:59 7.0M 
[ ]FLOP_prod5_last_frame.pdb.md52021-12-13 01:01 32  
[ ]FLOP_prod6_last_frame.pdb2013-06-19 09:59 7.0M 
[ ]FLOP_prod6_last_frame.pdb.md52021-12-13 01:01 32  
[ ]FLOP_prod6_trajectory_chk.dcd2013-07-01 13:46 37M 
[ ]FLOP_prod6_trajectory_chk.dcd.md52021-12-13 01:02 32  
[ ]FLOP_prod6_trajectory_chk.vmd2013-07-01 14:31 20K 
[ ]FLOP_prod6_trajectory_chk.vmd.md52021-12-13 01:00 32  
[ ]FLOP_prod7_last_frame.pdb2013-06-19 09:59 7.0M 
[ ]FLOP_prod7_last_frame.pdb.md52021-12-13 01:01 32  
[ ]FLOP_prod8_last_frame.pdb2013-06-20 11:49 7.0M 
[ ]FLOP_prod8_last_frame.pdb.md52021-12-13 01:02 32  
[ ]FLOP_prod9_last_frame.pdb2013-06-24 13:12 7.0M 
[ ]FLOP_prod9_last_frame.pdb.md52021-12-13 01:00 32  
[ ]FLOP_prod10_last_frame.pdb2013-06-28 15:07 7.0M 
[ ]FLOP_prod10_last_frame.pdb.md52021-12-13 01:01 32  
[ ]FLOP_traj_0_50_ns_chk.vmd2013-07-08 14:36 23K 
[ ]FLOP_traj_0_50_ns_chk.vmd.md52021-12-13 01:02 32  
[ ]FLOP_traj_50_500_ns_chk.dcd2013-07-03 17:28 169M 
[ ]FLOP_traj_50_500_ns_chk.dcd.md52021-12-13 01:02 32  
[ ]FLOP_traj_50_500_ns_chk.vmd2013-07-03 17:45 23K 
[ ]FLOP_traj_50_500_ns_chk.vmd.md52021-12-13 01:02 32  
[ ]FLOP_traj_50_500_ns_chk_loop.vmd2013-08-02 17:01 31K 
[ ]FLOP_traj_50_500_ns_chk_loop.vmd.md52021-12-13 01:02 32  
[ ]FLOP_traj_50_500_ns_chk_with_memb.vmd2013-07-04 12:52 25K 
[ ]FLOP_traj_50_500_ns_chk_with_memb.vmd.md52021-12-13 01:03 32  
[ ]FLOP_traj_50_500_ns_chk_with_memb_2.vmd2013-07-05 11:16 27K 
[ ]FLOP_traj_50_500_ns_chk_with_memb_2.vmd.md52021-12-13 01:02 32  
[DIR]Interaction_energy_from_simulations/2013-12-05 17:43 -  
[ ]aligning.pml2013-06-24 15:35 1.8K 
[ ]aligning.pml.md52021-12-13 01:02 32  
[ ]aligning_to_chk_RMSD_jump.pml2013-07-05 11:54 475  
[ ]aligning_to_chk_RMSD_jump.pml.md52021-12-13 01:00 32  
[ ]aligning_to_chk_loop_233_245.pml2013-07-08 15:33 1.5K 
[ ]aligning_to_chk_loop_233_245.pml.md52021-12-13 01:04 32  
[ ]analyseBilayerXST.awk2013-05-28 15:24 515  
[ ]analyseBilayerXST.awk.md52021-12-13 01:06 32  
[ ]arg71_memb.dat2013-12-05 17:59 31K 
[ ]arg71_memb.dat.md52021-12-13 01:07 32  
[ ]caca.dat2014-05-05 15:52 31K 
[ ]caca.dat.md52021-12-13 01:01 32  
[ ]catdcd_EDP_merging_command2013-12-05 17:10 202  
[ ]catdcd_EDP_merging_command.md52021-12-13 01:00 32  
[ ]catdcd_merging_command_dessolv2013-06-25 10:37 162  
[ ]catdcd_merging_command_dessolv.md52021-12-13 01:02 32  
[ ]catdcd_traj_chk_command2013-07-03 17:27 240  
[ ]catdcd_traj_chk_command.md52021-12-13 01:02 32  
[ ]catdcd_truncating_command2013-08-01 15:55 669  
[ ]catdcd_truncating_command.md52021-12-13 01:02 32  
[ ]cellsize.sh2013-05-28 15:24 2.8K 
[ ]cellsize.sh.md52021-12-13 01:01 32  
[TXT]charmmpdb.py2013-05-28 15:24 23K 
[ ]charmmpdb.py.md52021-12-13 01:02 32  
[ ]charmmpdb.pyc2013-05-29 12:01 22K 
[ ]charmmpdb.pyc.md52021-12-13 01:06 32  
[ ]combi_2or2_3ea1_a.pdb2013-07-29 16:03 187K 
[ ]combi_2or2_3ea1_a.pdb.md52021-12-13 01:01 32  
[ ]command_for_namd_energy2014-05-05 15:51 516  
[ ]command_for_namd_energy.md52021-12-13 01:01 32  
[TXT]crd_extraction.inp2013-08-01 15:56 1.7K 
[ ]crd_extraction.inp.md52021-12-13 01:01 32  
[ ]crd_extraction.out2013-08-01 15:20 12K 
[ ]crd_extraction.out.md52021-12-13 01:05 32  
[ ]crd_extraction_50_ns.out2013-08-01 15:57 12K 
[ ]crd_extraction_50_ns.out.md52021-12-13 01:00 32  
[ ]crd_from_dcd_catdcd_command2013-07-31 16:33 336  
[ ]crd_from_dcd_catdcd_command.md52021-12-13 01:02 32  
[ ]createions.str2013-05-29 12:16 687  
[ ]createions.str.md52021-12-13 01:03 32  
[ ]crystalwater_allh2.pdb2013-05-29 12:11 60K 
[ ]crystalwater_allh2.pdb.md52021-12-13 01:01 32  
[ ]dimensions2013-05-29 12:31 218  
[ ]dimensions.md52021-12-13 01:06 32  
[ ]do.sh2013-07-31 16:12 505  
[ ]do.sh.md52021-12-13 01:03 32  
[ ]do_wrapping_for_many_dcd_files.sh2013-07-06 23:01 484  
[ ]do_wrapping_for_many_dcd_files.sh.md52021-12-13 01:01 32  
[DIR]equilibration/2013-05-29 12:30 -  
[ ]fixed_atoms.pdb2013-05-29 12:42 7.0M 
[ ]fixed_atoms.pdb.md52021-12-13 01:01 32  
[TXT]fort.142013-08-01 15:18 0  
[ ]fort.14.md52021-12-13 01:00 32  
[ ]h81-v89_rmsd.inp2013-07-31 16:12 1.7K 
[ ]h81-v89_rmsd.inp.md52021-12-13 01:02 32  
[ ]h81-v89_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms2013-07-31 16:16 1.3M 
[ ]h81-v89_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms.md52021-12-13 01:03 32  
[ ]h81.out2013-07-31 16:16 11K 
[ ]h81.out.md52021-12-13 01:06 32  
[ ]hydrogen_bond.pml2013-07-01 15:09 1.1K 
[ ]hydrogen_bond.pml.md52021-12-13 01:01 32  
[ ]hydrogen_bond_40_41_44_88_together.pml2013-07-02 17:33 2.0K 
[ ]hydrogen_bond_40_41_44_88_together.pml.md52021-12-13 01:03 32  
[ ]hydrogen_bond_40_41_44_cation_pi_tyr_88_together.pml2013-07-01 16:20 2.0K 
[ ]hydrogen_bond_40_41_44_cation_pi_tyr_88_together.pml.md52021-12-13 01:02 32  
[ ]hydrogen_bond_ser_236.pml2013-07-01 15:09 1.4K 
[ ]hydrogen_bond_ser_236.pml.md52021-12-13 01:02 32  
[ ]hydrogen_bond_ser_236_cation_pi_tyr_200_together.pml2013-07-01 15:09 1.6K 
[ ]hydrogen_bond_ser_236_cation_pi_tyr_200_together.pml.md52021-12-13 01:01 32  
[ ]hydrogen_bond_ser_244.pml2013-07-01 15:09 1.2K 
[ ]hydrogen_bond_ser_244.pml.md52021-12-13 01:02 32  
[ ]hydrogen_bond_tyr.pml2013-07-01 15:09 1.1K 
[ ]hydrogen_bond_tyr.pml.md52021-12-13 01:00 32  
[ ]hydrogen_bond_tyr_246.pml2013-07-01 15:09 1.4K 
[ ]hydrogen_bond_tyr_246.pml.md52021-12-13 01:01 32  
[ ]ions2.pdb2013-05-29 12:03 19K 
[ ]ions2.pdb.md52021-12-13 01:01 32  
[ ]k38-g48_rmsd.inp2013-07-31 16:12 1.7K 
[ ]k38-g48_rmsd.inp.md52021-12-13 01:02 32  
[ ]k38-g48_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms2013-07-31 16:15 1.3M 
[ ]k38-g48_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms.md52021-12-13 01:02 32  
[ ]k38.out2013-07-31 16:15 11K 
[ ]k38.out.md52021-12-13 01:03 32  
[ ]lipid_jumping.pml2013-06-24 15:14 490  
[ ]lipid_jumping.pml.md52021-12-13 01:03 32  
[ ]lipid_jumping_pathway_chk_prod9.vmd2013-06-24 15:25 30K 
[ ]lipid_jumping_pathway_chk_prod9.vmd.md52021-12-13 01:03 32  
[ ]list_of_lipid_to_delete2013-05-28 15:49 130  
[ ]list_of_lipid_to_delete.md52021-12-13 01:02 32  
[ ]log.pml2013-05-28 15:24 295  
[ ]log.pml.md52021-12-13 01:03 32  
[ ]log_to_view_membrane_prot_overlap.pml2013-05-28 15:24 295  
[ ]log_to_view_membrane_prot_overlap.pml.md52021-12-13 01:03 32  
[ ]lys38_memb.dat2013-12-05 17:50 31K 
[ ]lys38_memb.dat.md52021-12-13 01:03 32  
[ ]lys44_memb.dat2013-12-05 17:55 31K 
[ ]lys44_memb.dat.md52021-12-13 01:06 32  
[ ]lys279_memb.dat2013-12-06 12:48 31K 
[ ]lys279_memb.dat.md52021-12-13 01:03 32  
[ ]membrane_allh2.pdb2013-05-29 12:03 2.1M 
[ ]membrane_allh2.pdb.md52021-12-13 01:00 32  
[ ]merda.pml2013-07-26 16:56 1.9K 
[ ]merda.pml.md52021-12-13 01:03 32  
[ ]merda_2.pml2013-07-26 16:58 1.9K 
[ ]merda_2.pml.md52021-12-13 01:00 32  
[ ]merda_3.pml2013-07-26 17:17 2.8K 
[ ]merda_3.pml.md52021-12-13 01:00 32  
[DIR]minimization/2013-05-29 12:30 -  
[ ]multi_alignment.pml2013-07-30 14:32 722  
[ ]multi_alignment.pml.md52021-12-13 01:05 32  
[ ]namd22014-05-05 15:32 16M 
[ ]namd2.md52021-12-13 01:06 32  
[DIR]namd_energy_test/2021-12-13 01:07 -  
[TXT]namd_merge.inp2013-07-01 09:50 1.6K 
[ ]namd_merge.inp.md52021-12-13 01:01 32  
[ ]namd_merge_0_50_ns.out2013-07-01 09:55 12K 
[ ]namd_merge_0_50_ns.out.md52021-12-13 01:00 32  
[ ]namd_merge_51_100_ns.out2013-06-24 14:18 12K 
[ ]namd_merge_51_100_ns.out.md52021-12-13 01:00 32  
[ ]namd_merge_prod3.out2013-06-24 14:23 12K 
[ ]namd_merge_prod3.out.md52021-12-13 01:02 32  
[ ]namd_merge_prod4.out2013-06-24 14:29 12K 
[ ]namd_merge_prod4.out.md52021-12-13 01:02 32  
[ ]namd_merge_prod5.out2013-06-24 14:33 12K 
[ ]namd_merge_prod5.out.md52021-12-13 01:02 32  
[ ]namd_merge_prod6.out2013-06-24 14:38 12K 
[ ]namd_merge_prod6.out.md52021-12-13 01:01 32  
[ ]namd_merge_prod7.out2013-06-24 14:47 12K 
[ ]namd_merge_prod7.out.md52021-12-13 01:03 32  
[ ]namd_merge_prod8.out2013-06-24 14:57 12K 
[ ]namd_merge_prod8.out.md52021-12-13 01:05 32  
[ ]namd_merge_prod9.out2013-06-24 15:02 12K 
[ ]namd_merge_prod9.out.md52021-12-13 01:01 32  
[ ]namd_merge_prod10.out2013-06-24 22:56 12K 
[ ]namd_merge_prod10.out.md52021-12-13 01:01 32  
[ ]namdenergy.tcl2014-05-05 15:28 69K 
[ ]namdenergy.tcl.md52021-12-13 01:00 32  
[ ]orderparam.tcl2013-05-28 15:24 6.3K 
[ ]orderparam.tcl.md52021-12-13 01:03 32  
[ ]p32013-05-28 15:24 877  
[ ]p3.md52021-12-13 01:02 32  
[ ]pbctools.tcl2013-05-28 15:24 26K 
[ ]pbctools.tcl.md52021-12-13 01:02 32  
[ ]pbcwrap.tcl2013-05-28 15:24 17K 
[ ]pbcwrap.tcl.md52021-12-13 01:02 32  
[DIR]pdb_files_from_last_step/2021-12-13 01:07 -  
[ ]pdb_from_wrapped_dcd_catdcd_command2013-07-26 14:09 1.0K 
[ ]pdb_from_wrapped_dcd_catdcd_command.md52021-12-13 01:02 32  
[ ]pdb_to_charmm.f2013-08-01 00:01 2.9K 
[ ]pdb_to_charmm.f.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh.crd2013-05-28 15:57 4.0M 
[ ]piplc_bound_to_dmpg_allh.crd.md52021-12-13 01:06 32  
[ ]piplc_bound_to_dmpg_allh.enr2013-05-29 00:20 4.3K 
[ ]piplc_bound_to_dmpg_allh.enr.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh.pdb2013-05-28 15:57 4.4M 
[ ]piplc_bound_to_dmpg_allh.pdb.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh.psf2013-05-28 15:57 13M 
[ ]piplc_bound_to_dmpg_allh.psf.md52021-12-13 01:06 32  
[ ]piplc_bound_to_dmpg_allh.rms2013-05-29 05:30 1.0K 
[ ]piplc_bound_to_dmpg_allh.rms.md52021-12-13 01:06 32  
[ ]piplc_bound_to_dmpg_allh_1200.crd2013-05-28 17:43 4.4M 
[ ]piplc_bound_to_dmpg_allh_1200.crd.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh_1200.pdb2013-05-28 16:54 4.4M 
[ ]piplc_bound_to_dmpg_allh_1200.pdb.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_2400.crd2013-05-28 18:33 4.4M 
[ ]piplc_bound_to_dmpg_allh_2400.crd.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh_2400.pdb2013-05-28 17:43 4.4M 
[ ]piplc_bound_to_dmpg_allh_2400.pdb.md52021-12-13 01:06 32  
[ ]piplc_bound_to_dmpg_allh_3600.crd2013-05-28 19:22 4.4M 
[ ]piplc_bound_to_dmpg_allh_3600.crd.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_3600.pdb2013-05-28 18:33 4.4M 
[ ]piplc_bound_to_dmpg_allh_3600.pdb.md52021-12-13 01:03 32  
[ ]piplc_bound_to_dmpg_allh_4800.crd2013-05-28 20:11 4.4M 
[ ]piplc_bound_to_dmpg_allh_4800.crd.md52021-12-13 01:01 32  
[ ]piplc_bound_to_dmpg_allh_4800.pdb2013-05-28 19:22 4.4M 
[ ]piplc_bound_to_dmpg_allh_4800.pdb.md52021-12-13 01:01 32  
[ ]piplc_bound_to_dmpg_allh_6000.crd2013-05-28 21:01 4.4M 
[ ]piplc_bound_to_dmpg_allh_6000.crd.md52021-12-13 01:04 32  
[ ]piplc_bound_to_dmpg_allh_6000.pdb2013-05-28 20:11 4.4M 
[ ]piplc_bound_to_dmpg_allh_6000.pdb.md52021-12-13 01:05 32  
[ ]piplc_bound_to_dmpg_allh_7200.crd2013-05-28 21:50 4.4M 
[ ]piplc_bound_to_dmpg_allh_7200.crd.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh_7200.pdb2013-05-28 21:01 4.4M 
[ ]piplc_bound_to_dmpg_allh_7200.pdb.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh_8400.crd2013-05-28 22:40 4.4M 
[ ]piplc_bound_to_dmpg_allh_8400.crd.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_8400.pdb2013-05-28 21:50 4.4M 
[ ]piplc_bound_to_dmpg_allh_8400.pdb.md52021-12-13 01:01 32  
[ ]piplc_bound_to_dmpg_allh_9600.crd2013-05-28 23:29 4.4M 
[ ]piplc_bound_to_dmpg_allh_9600.crd.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_9600.pdb2013-05-28 22:40 4.4M 
[ ]piplc_bound_to_dmpg_allh_9600.pdb.md52021-12-13 01:01 32  
[ ]piplc_bound_to_dmpg_allh_10800.crd2013-05-29 00:20 4.4M 
[ ]piplc_bound_to_dmpg_allh_10800.crd.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_10800.pdb2013-05-28 23:29 4.4M 
[ ]piplc_bound_to_dmpg_allh_10800.pdb.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_12000.crd2013-05-29 00:20 4.4M 
[ ]piplc_bound_to_dmpg_allh_12000.crd.md52021-12-13 01:01 32  
[ ]piplc_bound_to_dmpg_allh_12000.pdb2013-05-29 00:20 4.4M 
[ ]piplc_bound_to_dmpg_allh_12000.pdb.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_final.crd2013-05-29 05:30 4.0M 
[ ]piplc_bound_to_dmpg_allh_final.crd.md52021-12-13 01:02 32  
[ ]piplc_bound_to_dmpg_allh_final.pdb2013-05-29 05:30 4.4M 
[ ]piplc_bound_to_dmpg_allh_final.pdb.md52021-12-13 01:03 32  
[TXT]piplc_bound_to_dmpg_allh_final_TEMP.log2013-05-29 11:53 412  
[TXT]piplc_bound_to_dmpg_allh_final_TEMP.log.md52021-12-13 01:00 32  
[ ]piplc_bound_to_dmpg_allh_intermediate.pdb2013-05-29 05:30 4.4M 
[ ]piplc_bound_to_dmpg_allh_intermediate.pdb.md52021-12-13 01:03 32  
[ ]piplc_bound_to_dmpg_xplor.xplor.psf2013-05-28 15:57 13M 
[ ]piplc_bound_to_dmpg_xplor.xplor.psf.md52021-12-13 01:06 32  
[ ]piplc_dmpg_prot_final.pdb.for_anal.solv.psf2013-05-29 12:24 18M 
[ ]piplc_dmpg_prot_final.pdb.for_anal.solv.psf.md52021-12-13 01:00 32  
[ ]piplc_dmpg_prot_final.pdb.solv.crd2013-05-29 12:24 6.3M 
[ ]piplc_dmpg_prot_final.pdb.solv.crd.md52021-12-13 01:02 32  
[ ]piplc_dmpg_prot_final.pdb.solv.pdb2013-05-29 12:24 6.8M 
[ ]piplc_dmpg_prot_final.pdb.solv.pdb.md52021-12-13 01:00 32  
[ ]piplc_dmpg_prot_final.pdb.xplor.psf2013-05-29 12:24 18M 
[ ]piplc_dmpg_prot_final.pdb.xplor.psf.md52021-12-13 01:02 32  
[ ]piplc_protmemb.dyna_desolv.crd2013-07-01 09:55 2.2M 
[ ]piplc_protmemb.dyna_desolv.crd.md52021-12-13 01:02 32  
[ ]piplc_protmemb.dyna_desolv.pdb2013-07-01 09:55 2.4M 
[ ]piplc_protmemb.dyna_desolv.pdb.md52021-12-13 01:00 32  
[ ]piplc_protmemb.dyna_desolv.psf2013-07-01 09:55 8.5M 
[ ]piplc_protmemb.dyna_desolv.psf.md52021-12-13 01:01 32  
[ ]piplc_protmemb.dyna_desolv_50_ns.pdb2013-07-31 16:52 2.5M 
[ ]piplc_protmemb.dyna_desolv_50_ns.pdb.md52021-12-13 01:02 32  
[ ]piplc_protmemb.dyna_desolv_500_ns.pdb2013-07-31 16:39 2.5M 
[ ]piplc_protmemb.dyna_desolv_500_ns.pdb.md52021-12-13 01:03 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.crd2013-08-01 15:57 2.2M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.crd.md52021-12-13 01:02 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.pdb2013-08-01 15:57 2.4M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.pdb.md52021-12-13 01:02 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.psf2013-08-01 15:57 8.5M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_50_ns.psf.md52021-12-13 01:00 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.crd2013-08-01 15:20 2.2M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.crd.md52021-12-13 01:06 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.pdb2013-08-01 15:20 2.4M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.pdb.md52021-12-13 01:01 32  
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.psf2013-08-01 15:20 8.5M 
[ ]piplc_protmemb.dyna_desolv_ref_frame_500_ns.psf.md52021-12-13 01:03 32  
[ ]prod1.dcd2013-06-01 12:00 4.1G 
[ ]prod1.dcd.md52021-12-13 01:05 32  
[ ]prod1.xst2013-06-01 11:58 431K 
[ ]prod1.xst.md52021-12-13 01:02 32  
[ ]prod1_wrapped.dcd2013-06-01 12:20 4.1G 
[ ]prod1_wrapped.dcd.md52021-12-13 01:02 32  
[ ]prod2.dcd2013-06-04 11:18 6.2G 
[ ]prod2.dcd.md52021-12-13 01:03 32  
[ ]prod2.xst2013-06-04 11:14 647K 
[ ]prod2.xst.md52021-12-13 01:06 32  
[ ]prod2_wrapped.dcd2013-06-04 12:09 6.2G 
[ ]prod2_wrapped.dcd.md52021-12-13 01:06 32  
[ ]prod3.dcd2013-06-07 00:03 5.2G 
[ ]prod3.dcd.md52021-12-13 01:06 32  
[ ]prod3.xst2013-06-07 00:00 539K 
[ ]prod3.xst.md52021-12-13 01:00 32  
[ ]prod3_wrapped.dcd2013-06-07 12:12 5.2G 
[ ]prod3_wrapped.dcd.md52021-12-13 01:02 32  
[ ]prod3_wrapped_protmemb.dcd2013-06-24 14:23 1.8G 
[ ]prod3_wrapped_protmemb.dcd.md52021-12-13 01:00 32  
[ ]prod4.dcd2013-06-09 13:43 5.2G 
[ ]prod4.dcd.md52021-12-13 01:05 32  
[ ]prod4.xst2013-06-09 13:40 539K 
[ ]prod4.xst.md52021-12-13 01:06 32  
[ ]prod4_wrapped.dcd2013-06-09 14:27 5.2G 
[ ]prod4_wrapped.dcd.md52021-12-13 01:07 32  
[ ]prod4_wrapped_protmemb.dcd2013-06-24 14:29 1.8G 
[ ]prod4_wrapped_protmemb.dcd.md52021-12-13 01:01 32  
[ ]prod5.dcd2013-06-12 10:51 5.2G 
[ ]prod5.dcd.md52021-12-13 01:03 32  
[ ]prod5.xst2013-06-12 10:49 539K 
[ ]prod5.xst.md52021-12-13 01:03 32  
[ ]prod5_wrapped.dcd2013-06-12 11:53 5.2G 
[ ]prod5_wrapped.dcd.md52021-12-13 01:01 32  
[ ]prod5_wrapped_protmemb.dcd2013-06-24 14:33 1.8G 
[ ]prod5_wrapped_protmemb.dcd.md52021-12-13 01:02 32  
[ ]prod6.dcd2013-06-14 23:30 5.2G 
[ ]prod6.dcd.md52021-12-13 01:06 32  
[ ]prod6.xst2013-06-14 23:28 539K 
[ ]prod6.xst.md52021-12-13 01:05 32  
[ ]prod6_wrapped.dcd2013-06-15 00:25 5.2G 
[ ]prod6_wrapped.dcd.md52021-12-13 01:06 32  
[ ]prod6_wrapped_protmemb.dcd2013-06-24 14:38 1.8G 
[ ]prod6_wrapped_protmemb.dcd.md52021-12-13 01:05 32  
[ ]prod7.dcd2013-06-17 08:48 5.2G 
[ ]prod7.dcd.md52021-12-13 01:07 32  
[ ]prod7.xst2013-06-17 08:34 539K 
[ ]prod7.xst.md52021-12-13 01:03 32  
[ ]prod7_wrapped.dcd2013-06-17 09:44 5.2G 
[ ]prod7_wrapped.dcd.md52021-12-13 01:03 32  
[ ]prod7_wrapped_protmemb.dcd2013-06-24 14:47 1.8G 
[ ]prod7_wrapped_protmemb.dcd.md52021-12-13 01:00 32  
[ ]prod8.dcd2013-06-19 15:36 5.2G 
[ ]prod8.dcd.md52021-12-13 01:04 32  
[ ]prod8.xst2013-06-19 15:33 539K 
[ ]prod8.xst.md52021-12-13 01:02 32  
[ ]prod8_wrapped.dcd2013-06-19 16:34 5.2G 
[ ]prod8_wrapped.dcd.md52021-12-13 01:02 32  
[ ]prod8_wrapped_protmemb.dcd2013-06-24 14:57 1.8G 
[ ]prod8_wrapped_protmemb.dcd.md52021-12-13 01:02 32  
[ ]prod9.dcd2013-06-22 17:14 5.2G 
[ ]prod9.dcd.md52021-12-13 01:01 32  
[ ]prod9.xst2013-06-22 17:12 539K 
[ ]prod9.xst.md52021-12-13 01:06 32  
[ ]prod9_wrapped.dcd2013-06-22 18:16 5.2G 
[ ]prod9_wrapped.dcd.md52021-12-13 01:05 32  
[ ]prod9_wrapped_protmemb.dcd2013-06-24 15:01 1.8G 
[ ]prod9_wrapped_protmemb.dcd.md52021-12-13 01:06 32  
[ ]prod10.dcd2013-06-24 21:33 5.2G 
[ ]prod10.dcd.md52021-12-13 01:00 32  
[ ]prod10.xst2013-06-24 21:30 539K 
[ ]prod10.xst.md52021-12-13 01:03 32  
[ ]prod10_wrapped.dcd2013-06-24 22:41 5.2G 
[ ]prod10_wrapped.dcd.md52021-12-13 01:01 32  
[ ]prod10_wrapped_protmemb.dcd2013-06-24 22:55 1.8G 
[ ]prod10_wrapped_protmemb.dcd.md52021-12-13 01:01 32  
[ ]prod11.dcd2013-07-06 22:57 5.2G 
[ ]prod11.dcd.md52021-12-13 01:00 32  
[ ]prod11.xst2013-07-06 22:55 539K 
[ ]prod11.xst.md52021-12-13 01:00 32  
[ ]prod11_wrapped.dcd2013-07-07 00:08 5.2G 
[ ]prod11_wrapped.dcd.md52021-12-13 01:05 32  
[ ]prod_final_50_500_ns_wrapped_protmemb.dcd2013-06-25 11:14 16G 
[ ]prod_final_50_500_ns_wrapped_protmemb.dcd.md52021-12-13 01:04 32  
[ ]prod_final_50_500_ns_wrapped_protmemb_truncated.dcd2013-07-31 17:26 3.4M 
[ ]prod_final_50_500_ns_wrapped_protmemb_truncated.dcd.md52021-12-13 01:04 32  
[ ]prod_final_50_500_ns_wrapped_truncated_for_EDP.dcd2013-12-05 17:10 476M 
[ ]prod_final_50_500_ns_wrapped_truncated_for_EDP.dcd.md52021-12-13 01:00 32  
[DIR]production/2021-12-13 01:07 -  
[ ]protein_t_allh2.pdb2013-05-29 12:02 362K 
[ ]protein_t_allh2.pdb.md52021-12-13 01:02 32  
[DIR]pymol_pics_pi_plc_DMPG_100/2021-12-13 01:07 -  
[ ]ref_frame_50_ns_wrapped.dcd2013-08-01 15:55 1.1M 
[ ]ref_frame_50_ns_wrapped.dcd.md52021-12-13 01:06 32  
[ ]ref_frame_50_ns_wrapped_protmemb.dcd2013-08-01 15:56 384K 
[ ]ref_frame_50_ns_wrapped_protmemb.dcd.md52021-12-13 01:00 32  
[ ]ref_frame_500_ns_wrapped.dcd2013-08-01 15:14 1.1M 
[ ]ref_frame_500_ns_wrapped.dcd.md52021-12-13 01:06 32  
[ ]ref_frame_500_ns_wrapped_protmemb.dcd2013-08-01 15:20 384K 
[ ]ref_frame_500_ns_wrapped_protmemb.dcd.md52021-12-13 01:06 32  
[ ]refor.sh2013-05-28 15:24 2.2K 
[ ]refor.sh.md52021-12-13 01:02 32  
[ ]s236-y248_rmsd.inp2013-07-31 16:12 1.7K 
[ ]s236-y248_rmsd.inp.md52021-12-13 01:02 32  
[ ]s236-y248_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms2013-07-31 16:16 1.3M 
[ ]s236-y248_rmsd.piplc_protmemb.dyna_desolv.crd.prod_final_50_500_ns_wrapped_protmemb.dcd.rms.md52021-12-13 01:02 32  
[ ]s236.out2013-07-31 16:16 11K 
[ ]s236.out.md52021-12-13 01:02 32  
[ ]sasa_calculation.pml2013-11-25 10:11 709  
[ ]sasa_calculation.pml.md52021-12-13 01:01 32  
[ ]segid_solv.pdb2013-05-29 12:14 1.8M 
[ ]segid_solv.pdb.md52021-12-13 01:03 32  
[ ]show_hydrophobics.pml2013-07-26 13:30 412  
[ ]show_hydrophobics.pml.md52021-12-13 01:01 32  
[ ]solv_box.pdb2013-05-29 11:53 7.0M 
[ ]solv_box.pdb.md52021-12-13 01:02 32  
[ ]solv_box.psf2013-05-29 11:53 13M 
[ ]solv_box.psf.md52021-12-13 01:01 32  
[ ]solvboxwater_allh2.pdb02013-05-29 12:03 2.2M 
[ ]solvboxwater_allh2.pdb0.md52021-12-13 01:03 32  
[ ]solvboxwater_allh2.pdb12013-05-29 12:03 267K 
[ ]solvboxwater_allh2.pdb1.md52021-12-13 01:05 32  
[ ]surface_area_calculation.pml2013-11-25 10:15 710  
[ ]surface_area_calculation.pml.md52021-12-13 01:06 32  
[ ]test.pdb2013-05-28 15:52 2.5M 
[ ]test.pdb.md52021-12-13 01:01 32  
[ ]to_view_polar_contacts_pymol.pml2013-06-07 16:36 519  
[ ]to_view_polar_contacts_pymol.pml.md52021-12-13 01:02 32  
[ ]vmd_command_for_restraint2013-05-28 15:24 264  
[ ]vmd_command_for_restraint.md52021-12-13 01:06 32  
[ ]vmd_command_for_restraint.tcl2013-05-29 12:40 199  
[ ]vmd_command_for_restraint.tcl.md52021-12-13 01:00 32  
[ ]wrap2.tmp2013-05-28 15:24 725  
[ ]wrap2.tmp.md52021-12-13 01:06 32  
[ ]wrap2.vmd2013-07-06 23:02 725  
[ ]wrap2.vmd.md52021-12-13 01:02 32  
[ ]wrapping_chk_prod12013-06-01 12:20 515K 
[ ]wrapping_chk_prod1.md52021-12-13 01:03 32  
[ ]wrapping_chk_prod32013-06-07 12:13 645K 
[ ]wrapping_chk_prod3.md52021-12-13 01:06 32  
[ ]wrapping_chk_prod42013-06-09 14:27 645K 
[ ]wrapping_chk_prod4.md52021-12-13 01:02 32  
[ ]wrapping_chk_prod62013-06-15 00:27 645K 
[ ]wrapping_chk_prod6.md52021-12-13 01:01 32  
[ ]wrapping_chk_prod102013-06-24 22:43 645K 
[ ]wrapping_chk_prod10.md52021-12-13 01:06 32  
[ ]wrapping_chk_prod112013-07-07 00:09 645K 
[ ]wrapping_chk_prod11.md52021-12-13 01:03 32