#! /bin/csh

set charmm=/net/bccs/cbu/linux/Charmm/c33b1/exec/gnu/charmm
#set charmm="/local/bin/charmm -chsize 100000"

#foreach case ( 100-to-200ns_wrapped.dcd 200-to-300ns_wrapped.dcd 300-to-400ns_wrapped.dcd 400-to-500ns_wrapped.dcd 500-to-600ns_wrapped.dcd )
foreach case ( prod_final_50_500_ns_wrapped_protmemb.dcd )

	echo $case

        $charmm dcd:$case < k38-g48_rmsd.inp>k38.out
        $charmm dcd:$case < s236-y248_rmsd.inp>s236.out
        $charmm dcd:$case < h81-v89_rmsd.inp>h81.out

end