This README file was created on 2023-01-13 (YYYY-MM-DD) by Christa Ringers. Last updated: 2023-01-13. ------------------- GENERAL INFORMATION ------------------- // Title of Dataset: Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia. // DOI: // Contact Information // Name: Jurisch-Yaksi, Nathalie // Institution: Norwegian University of Science and Technology, Department of Clinical and Molecular Medicine // Email: nathalie.jurisch-yaksi@ntnu.no // Date of data collection/generation: See metadata of each data type. // Description of dataset: This dataset contains most data necesary to produce the figures containing original data in the paper "Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia." (DOI to be provided after acceptance). The dataset is organized per figure, and the DataWhere.txt file contains a short description of where to find the data, the code, and how to reproduce the figures. The data type is specific to the figure. Make sure to have the folder added to the path in Matlab. All supporting functions are present. -------------------------- METHODOLOGICAL INFORMATION -------------------------- // Description of sources and methods used for collection/generation of data: Refer to the paper methods section // Methods for processing the data: The raw data was processed in Matlab (version: 2017-2020b). Most of these codes and analyses are not polished. We provided them in a repository rather than upon request to promote their usage. One needs to replace the absolute path in most scripts. -------------------------- DATA TYPES -------------------------- // confocal // extension: .lsm // metadata: embedded in the file // example: 20191019_foxGCaMP6s_glutTub_Bcatenin_Dapi_fish1_zoom3_rightNostril.lsm // lightsheet // extension: .stack // metadata: ch0.XML document in the same folder // example: TM00000_CM0_CHN00.stack // light transmission // extension: .mat // metadata: .json file with the same name as the raw data // example: 03-02-2017_0_0_aligned.mat -------------------- DATA & FILE OVERVIEW -------------------- // File List: The naming convention refers to which figure the data in the file or folder is used for. // 00_readme.txt // figure1 // figure2 // figure3 // figure4 // figure5 // figure6 // reviewers_comments // suppl_videos Raw data too large to upload can be requested. This concerns underlying data for time-series experiments, left-right experiments, and viscosity experiments. SHARING/ACCESS INFORMATION -------------------------- // Licenses/Restrictions: See Terms tab. // Links to publications that cite or use the data: See metadata field Related Publication. // Links/relationships to related data sets: See metadata field Related Datasets. // Data sources: See metadata field Data Sources. // Recommended citation: See citation generated by repository.