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Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> 
> 
> source("groel_xrayPCA_tstates_WT.r")

Attaching package: 'bio3d'


	The following object(s) are masked from package:base :

	 identity 

      segid  chain  resno  resid  eleno  elety 
Stest ""     ""     ""     ""     ""     "CA"  
Natom "7712" "7712" "7712" "7712" "7712" "1048"
 *  Selected a total of: 1048 intersecting atoms  *
Loading required package: ncdf
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/116_1XCK_apo/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/gulrotkake/slars/groel_md/1XCK/129_1XCK_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/129_1XCK_MGATP_temp350/results/traj_dimers/50-90ns_noWAT_1000frames_noATP_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1000"
[1] "Atoms: 7712"
> source("groel_xrayPCA_tstates_mutants.r")
Loading required package: foreign
Loading required package: sp
Loading required package: lattice

	Note: polygon geometry computations in maptools
 	depend on the package gpclib, which has a
 	restricted licence. It is disabled by default;
 	to enable gpclib, type gpclibPermit()

Checking rgeos availability as gpclib substitute:
FALSE 
      segid  chain  resno  resid  eleno  elety 
Stest ""     ""     ""     ""     ""     "CA"  
Natom "7712" "7712" "7712" "7712" "7712" "1048"
 *  Selected a total of: 1048 intersecting atoms  *
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/mutants/162_E434K_MGATP/results/traj_dimers/20-50ns_noWAT_1500frames_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
> source("groel_xrayPCA_tstates_1XCK-E434K.r")
      segid  chain  resno  resid  eleno  elety 
Stest ""     ""     ""     ""     ""     "CA"  
Natom "7712" "7712" "7712" "7712" "7712" "1048"
 *  Selected a total of: 1048 intersecting atoms  *
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK/191_1XCK_E434K/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
> source("groel_xrayPCA_tstates_1XCK-rhodanese.r")
      segid  chain  resno  resid  eleno  elety 
Stest ""     ""     ""     ""     ""     "CA"  
Natom "7712" "7712" "7712" "7712" "7712" "1048"
 *  Selected a total of: 1048 intersecting atoms  *
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_1.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_2.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_3.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_4.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_5.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_6.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_8.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_9.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_10.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_11.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_12.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
[1] "Reading file /net/lutefisk/slars/groel_md/1XCK_rhodanese/171_1XCK_rhodanese_ATP/results/traj_dimers/20-50ns_noWAT_1500frames_noATP_noH_chain_13.nc"
[1] "Produced by program: sander"
[1] "File conventions AMBER version 1.0"
[1] "Frames: 1500"
[1] "Atoms: 7712"
> 
> source("combo_confplot.r")
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
>