#!/bin/bash

python ~/Documents/md_scripts/plot_md.py rmsd 1xck_rmsd '1XCK Cis Ring MgATP' 'Time (ns)' 'RMSd (Å)' '0' '0' 'rmsd.dat'

python ~/Documents/md_scripts/plot_md.py rmsd 1xck_rmsd_chainA '1XCK Chain A MgATP' 'Time (ns)' 'RMSd (Å)' '0' '0' 'rmsd_chainA.dat'

python ~/Documents/md_scripts/plot_md.py rmsd 1xck_A_domains '1XCK chain A domains - MgATP' 'Time (ns)' 'RMSd (Å)' 0 5 rmsd_equatorial.dat rmsd_apical.dat rmsd_intermediate.dat Equatorial Apical Intermediate 0 5