

  \-/  
  -/-   PTRAJ: a utility for processing trajectory files
  /-\  
  \-/   Version: "AMBER 10.0 integrated" (2/15/2008)
  -/-   Executable is: "ptraj"
  /-\  
  \-/   Residue labels:

 ALA  ALA  LYS  ASP  VAL  LYS  PHE  GLY  ASN  ASP 
 ALA  ARG  VAL  LYS  MET  LEU  ARG  GLY  VAL  ASN 
 VAL  LEU  ALA  ASP  ALA  VAL  LYS  VAL  THR  LEU 
 GLY  PRO  LYS  GLY  ARG  ASN  VAL  VAL  LEU  ASP 
 LYS  SER  PHE  GLY  ALA  PRO  THR  ILE  THR  LYS 
 ASP  GLY  VAL  SER  VAL  ALA  ARG  GLU  ILE  GLU 
 LEU  GLU  ASP  LYS  PHE  GLU  ASN  MET  GLY  ALA 
 GLN  MET  VAL  LYS  GLU  VAL  ALA  SER  LYS  ALA 
 ASN  ASP  ALA  ALA  GLY  ASP  GLY  THR  THR  THR 
 ALA  THR  VAL  LEU  ALA  GLN  ALA  ILE  ILE  THR 
 GLU  GLY  LEU  LYS  ALA  VAL  ALA  ALA  GLY  MET 
 ASN  PRO  MET  ASP  LEU  LYS  ARG  GLY  ILE  ASP 
 LYS  ALA  VAL  THR  ALA  ALA  VAL  GLU  GLU  LEU 
 LYS  ALA  LEU  SER  VAL  PRO  CYS  SER  ASP  SER 
 LYS  ALA  ILE  ALA  GLN  VAL  GLY  THR  ILE  SER 
 ALA  ASN  SER  ASP  GLU  THR  VAL  GLY  LYS  LEU 
 ILE  ALA  GLU  ALA  MET  ASP  LYS  VAL  GLY  LYS 
 GLU  GLY  VAL  ILE  THR  VAL  GLU  ASP  GLY  THR 
 GLY  LEU  GLN  ASP  GLU  LEU  ASP  VAL  VAL  GLU 
 GLY  MET  GLN  PHE  ASP  ARG  GLY  TYR  LEU  SER 
 PRO  TYR  PHE  ILE  ASN  LYS  PRO  GLU  THR  GLY 
 ALA  VAL  GLU  LEU  GLU  SER  PRO  PHE  ILE  LEU 
 LEU  ALA  ASP  LYS  LYS  ILE  SER  ASN  ILE  ARG 
 GLU  MET  LEU  PRO  VAL  LEU  GLU  ALA  VAL  ALA 
 LYS  ALA  GLY  LYS  PRO  LEU  LEU  ILE  ILE  ALA 
 GLU  ASP  VAL  GLU  GLY  GLU  ALA  LEU  ALA  THR 
 LEU  VAL  VAL  ASN  THR  MET  ARG  GLY  ILE  VAL 
 LYS  VAL  ALA  ALA  VAL  LYS  ALA  PRO  GLY  PHE 
 GLY  ASP  ARG  ARG  LYS  ALA  MET  LEU  GLN  ASP 
 ILE  ALA  THR  LEU  THR  GLY  GLY  THR  VAL  ILE 
 SER  GLU  GLU  ILE  GLY  MET  GLU  LEU  GLU  LYS 
 ALA  THR  LEU  GLU  ASP  LEU  GLY  GLN  ALA  LYS 
 ARG  VAL  VAL  ILE  ASN  LYS  ASP  THR  THR  THR 
 ILE  ILE  ASP  GLY  VAL  GLY  GLU  GLU  ALA  ALA 
 ILE  GLN  GLY  ARG  VAL  ALA  GLN  ILE  ARG  GLN 
 GLN  ILE  GLU  GLU  ALA  THR  SER  ASP  TYR  ASP 
 ARG  GLU  LYS  LEU  GLN  GLU  ARG  VAL  ALA  LYS 
 LEU  ALA  GLY  GLY  VAL  ALA  VAL  ILE  LYS  VAL 
 GLY  ALA  ALA  THR  GLU  VAL  GLU  MET  LYS  GLU 
 LYS  LYS  ALA  ARG  VAL  GLU  ASP  ALA  LEU  HID 
 ALA  THR  ARG  ALA  ALA  VAL  GLU  GLU  GLY  VAL 
 VAL  ALA  GLY  GLY  GLY  VAL  ALA  LEU  ILE  ARG 
 VAL  ALA  SER  LYS  LEU  ALA  ASP  LEU  ARG  GLY 
 GLN  ASN  GLU  ASP  GLN  ASN  VAL  GLY  ILE  LYS 
 VAL  ALA  LEU  ARG  ALA  MET  GLU  ALA  PRO  LEU 
 ARG  GLN  ILE  VAL  LEU  ASN  CYS  GLY  GLU  GLU 
 PRO  SER  VAL  VAL  ALA  ASN  THR  VAL  LYS  GLY 
 GLY  ASP  GLY  ASN  TYR  GLY  TYR  ASN  ALA  ALA 
 THR  GLU  GLU  TYR  GLY  ASN  MET  ILE  ASP  MET 
 GLY  ILE  LEU  ASP  PRO  THR  LYS  VAL  THR  ARG 
 SER  ALA  LEU  GLN  TYR  ALA  ALA  SER  VAL  ALA 
 GLY  LEU  MET  ILE  THR  THR  GLU  CYS  MET  VAL 
 THR  ASP  LEU  PRO  ADP  MG2  WAT  WAT  WAT  WAT 
 WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT 
 ...
 WAT 

 Setting box to be an exact truncated octahedron, angle is 109.471221

PTRAJ: Processing input from file short.ptraj

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod1.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod1.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod2.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod2.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod3.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod3.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod4.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod4.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod5.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod5.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (55)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod6.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod6.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod7.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod7.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod8.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod8.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod9.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod9.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod10.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod10.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod11.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod11.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod12.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod12.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod13.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod13.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod14.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod14.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod15.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod15.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod16.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod16.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod17.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod17.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod18.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod18.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod19.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod19.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod20.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod20.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod21.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod21.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod22.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod22.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod23.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod23.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod24.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod24.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod25.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod25.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod26.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod26.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod27.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod27.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod28.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod28.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod29.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod29.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod30.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod30.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod31.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod31.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod32.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod32.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod33.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod33.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod34.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod34.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod35.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod35.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod36.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod36.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod37.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod37.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod38.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod38.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod39.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod39.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod40.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod40.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod41.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod41.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod42.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod42.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod43.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod43.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod44.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod44.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod45.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod45.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod46.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod46.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod47.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod47.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod48.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod48.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod49.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod49.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod50.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod50.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod51.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod51.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod52.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod52.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod53.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod53.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod54.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod54.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod55.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod55.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod56.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod56.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod57.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod57.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod58.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod58.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod59.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod59.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod60.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod60.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod61.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod61.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod62.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod62.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod63.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod63.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod64.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod64.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod65.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod65.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod66.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod66.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod67.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod67.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod68.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod68.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod69.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod69.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod70.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod70.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod71.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod71.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod72.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod72.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod73.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod73.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod74.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod74.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod75.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod75.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod76.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod76.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod77.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod77.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod78.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod78.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (1)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod79.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod79.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod80.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod80.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod81.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod81.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod82.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod82.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod83.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod83.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod84.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod84.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod85.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod85.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod86.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod86.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod87.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod87.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod88.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod88.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod89.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod89.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod90.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod90.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod91.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod91.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod92.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod92.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod93.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod93.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod94.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod94.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod95.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod95.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod96.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod96.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod97.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod97.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod98.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod98.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod99.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod99.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod100.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod100.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod101.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod101.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod102.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod102.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod103.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod103.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod104.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod104.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod105.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod105.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod106.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod106.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod107.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod107.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod108.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod108.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod109.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod109.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod110.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod110.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod111.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod111.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod112.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod112.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod113.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod113.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod114.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod114.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (1)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod115.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod115.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod116.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod116.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod117.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod117.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod118.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod118.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod119.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod119.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod120.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod120.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod121.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod121.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod122.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod122.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod123.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod123.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod124.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod124.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod125.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod125.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod126.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod126.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod127.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod127.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod128.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod128.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod129.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod129.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod130.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod130.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod131.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod131.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod132.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod132.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod133.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod133.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod134.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod134.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod135.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod135.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod136.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod136.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod137.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod137.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod138.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod138.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod139.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod139.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod140.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod140.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod141.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod141.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod142.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod142.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod143.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod143.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod144.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod144.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod145.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod145.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod146.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod146.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod147.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod147.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod148.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod148.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod149.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod149.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod150.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod150.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod151.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod151.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod152.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod152.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod153.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod153.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod154.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod154.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod155.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod155.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod156.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod156.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod157.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod157.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod158.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod158.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod159.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod159.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod160.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod160.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod161.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod161.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod162.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod162.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod163.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod163.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (1)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod164.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod164.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod165.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod165.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod166.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod166.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod167.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod167.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod168.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod168.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod169.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod169.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod170.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod170.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod171.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod171.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod172.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod172.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod173.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod173.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod174.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod174.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod175.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod175.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod176.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod176.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod177.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod177.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod178.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod178.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod179.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod179.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod180.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod180.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod181.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod181.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod182.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod182.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod183.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod183.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod184.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod184.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod185.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod185.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod186.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod186.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod187.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod187.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod188.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod188.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod189.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod189.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod190.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod190.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod191.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod191.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod192.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod192.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod193.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod193.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod194.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod194.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod195.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod195.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod196.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod196.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod197.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod197.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod198.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod198.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod199.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod199.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod200.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod200.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod201.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod201.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod202.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod202.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod203.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod203.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod204.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod204.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod205.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod205.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod206.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod206.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod207.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod207.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod208.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod208.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod209.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod209.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod210.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod210.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod211.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod211.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod212.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod212.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (1)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod213.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod213.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod214.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod214.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod215.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod215.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod216.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod216.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod217.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod217.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod218.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod218.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod219.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod219.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod220.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod220.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod221.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod221.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod222.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod222.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod223.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod223.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod224.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod224.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod225.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod225.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod226.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod226.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod227.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod227.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod228.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod228.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod229.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod229.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod230.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod230.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod231.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod231.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod232.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod232.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod233.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod233.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod234.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod234.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod235.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod235.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod236.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod236.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod237.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod237.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod238.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod238.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod239.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod239.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod240.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod240.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod241.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod241.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod242.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod242.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod243.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod243.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod244.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod244.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod245.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod245.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod246.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod246.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod247.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod247.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod248.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod248.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod249.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod249.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod250.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod250.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod251.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod251.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod252.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod252.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod253.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod253.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod254.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod254.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod255.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod255.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod256.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod256.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod257.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod257.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod258.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod258.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod259.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod259.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod260.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod260.mdcrd
FYI ptrajSetupIO(): trajin stop value (100) is greater than the number of sets read in.
Setting stop to the maximum value (1)
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod261.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod261.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod262.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod262.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod263.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod263.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod264.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod264.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod265.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod265.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod266.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod266.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod267.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod267.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod268.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod268.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: trajin 124_1SVT_chainA_MGADP_prod269.mdcrd 1 100 100
  Checking coordinates: 124_1SVT_chainA_MGADP_prod269.mdcrd
WARNING in ptrajSetupIO(): Offset is so large that only 1 set
  will be processed...

PTRAJ: reference ../1SVT_chainA_MGADP_sol.inpcrd

Processing AMBER restart file ../1SVT_chainA_MGADP_sol.inpcrd

PTRAJ: rms reference mass @N,CA,C
Mask [@N,CA,C] represents 1572 atoms

PTRAJ: trajout 270ns_short.nc netcdf 

PTRAJ: Successfully read the input file.
       Coordinate processing will occur on 269 frames.
       Summary of I/O and actions follows:

INPUT COORDINATE FILES
  File (124_1SVT_chainA_MGADP_prod1.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod2.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod3.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod4.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod5.mdcrd) is a NetCDF AMBER trajectory with box info with 55 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod6.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod7.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod8.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod9.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod10.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod11.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod12.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod13.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod14.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod15.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod16.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod17.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod18.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod19.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod20.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod21.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod22.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod23.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod24.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod25.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod26.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod27.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod28.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod29.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod30.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod31.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod32.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod33.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod34.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod35.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod36.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod37.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod38.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod39.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod40.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod41.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod42.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod43.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod44.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod45.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod46.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod47.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod48.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod49.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod50.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod51.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod52.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod53.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod54.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod55.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod56.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod57.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod58.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod59.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod60.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod61.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod62.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod63.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod64.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod65.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod66.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod67.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod68.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod69.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod70.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod71.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod72.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod73.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod74.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod75.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod76.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod77.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod78.mdcrd) is a NetCDF AMBER trajectory with box info with 1 sets
  File (124_1SVT_chainA_MGADP_prod79.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod80.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod81.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod82.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod83.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod84.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod85.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod86.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod87.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod88.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod89.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod90.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod91.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod92.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod93.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod94.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod95.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod96.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod97.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod98.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod99.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod100.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod101.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod102.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod103.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod104.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod105.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod106.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod107.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod108.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod109.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod110.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod111.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod112.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod113.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod114.mdcrd) is a NetCDF AMBER trajectory with box info with 1 sets
  File (124_1SVT_chainA_MGADP_prod115.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod116.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod117.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod118.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod119.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod120.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod121.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod122.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod123.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod124.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod125.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod126.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod127.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod128.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod129.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod130.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod131.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod132.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod133.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod134.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod135.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod136.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod137.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod138.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod139.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod140.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod141.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod142.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod143.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod144.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod145.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod146.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod147.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod148.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod149.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod150.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod151.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod152.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod153.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod154.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod155.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod156.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod157.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod158.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod159.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod160.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod161.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod162.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod163.mdcrd) is a NetCDF AMBER trajectory with box info with 1 sets
  File (124_1SVT_chainA_MGADP_prod164.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod165.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod166.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod167.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod168.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod169.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod170.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod171.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod172.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod173.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod174.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod175.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod176.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod177.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod178.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod179.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod180.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod181.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod182.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod183.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod184.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod185.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod186.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod187.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod188.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod189.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod190.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod191.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod192.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod193.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod194.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod195.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod196.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod197.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod198.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod199.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod200.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod201.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod202.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod203.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod204.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod205.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod206.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod207.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod208.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod209.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod210.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod211.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod212.mdcrd) is a NetCDF AMBER trajectory with box info with 1 sets
  File (124_1SVT_chainA_MGADP_prod213.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod214.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod215.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod216.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod217.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod218.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod219.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod220.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod221.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod222.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod223.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod224.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod225.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod226.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod227.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod228.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod229.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod230.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod231.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod232.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod233.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod234.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod235.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod236.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod237.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod238.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod239.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod240.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod241.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod242.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod243.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod244.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod245.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod246.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod247.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod248.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod249.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod250.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod251.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod252.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod253.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod254.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod255.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod256.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod257.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod258.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod259.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod260.mdcrd) is a NetCDF AMBER trajectory with box info with 1 sets
  File (124_1SVT_chainA_MGADP_prod261.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod262.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod263.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod264.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod265.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod266.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod267.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod268.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)
  File (124_1SVT_chainA_MGADP_prod269.mdcrd) is a NetCDF AMBER trajectory with box info with 100 sets (processing only 1)

OUTPUT COORDINATE FILE
  File (270ns_short.nc) is a NetCDF AMBER trajectory with box info

REFERENCE FILE
  File (../1SVT_chainA_MGADP_sol.inpcrd) is an AMBER restart file with box information

ACTIONS
  1>  RMS to reference structure (../1SVT_chainA_MGADP_sol.inpcrd) using mass weighting
      Atom selection follows :1-524@N,CA,C


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Set    100 
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Set    100 
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Set    100 
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Set    100 
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Set    100 
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Set     50                                                  
Set    100 
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Set      1 .                                                
Set     50                                                  
Set    100 
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Set    100 
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Set    100 
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Set     50                                                  
Set    100 
Set      1 .                                                
Set     50                                                  
Set    100 

PTRAJ: Successfully read in 26360 sets and processed 269 sets.
       Dumping accumulated results (if any)

