#!/bin/bash

python ~/Documents/md_scripts/plot_md.py rmsd 1svt_chainA_rmsd '1SVT ChainA -APO-' 'Time (ns)' 'RMSd (Å)' 0 10 rmsd.dat rmsd_apical.dat rmsd_intermediate.dat rmsd_equatorial.dat 'Chain A' 'Apical' Intermediate Equatorial 0 10

python ~/Documents/md_scripts/plot_md.py rmsd 1svt_chainA_rmsd_double '1SVT ChainA -APO-' 'Time (ns)' 'RMSd (Å)' 0 10 rmsd_ap_int.dat rmsd_eq_int.dat 'Apical and intermediate' 'Equatorial and intermediate' 0 10