#!/bin/bash

RESULTS="projection_notNormalized.dat"

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-1000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-5000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-10000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-20000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-50000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-100000ps.dat hoo2 >> $RESULTS

/net/bccs/cbu/linux64/PYTHON/Python-2.5.2/bin/python ~/Documents/md_scripts/overlap_pca_diffconf.py /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/start.pdb /net/gulrotkake/slars/groel_nma_korgpil/1SVT/chainA/1xck_reference.pdb evecs_pca_1-200000ps.dat hoo2 >> $RESULTS