#!/bin/bash

export WORKDIR=`pwd -P`

cd $WORKDIR

m=`qsub -l walltime=01:00:00   -vGMXFILE=assemble.mdp,WORKDIR=$WORKDIR submit_md_1.pbs`
n=`qsub -l walltime=04:00:00   -W depend=afterok:$m -vGMXFILE=assemble.mdp,WORKDIR=$WORKDIR submit_continu_32.pbs`
o=`qsub -l walltime=04:00:00   -W depend=afternotok:$n -vGMXFILE=assemble.mdp,WORKDIR=$WORKDIR submit_continu_32.pbs`
#p=`qsub -l walltime=04:00:00   -W depend=afternotok:$o -vGMXFILE=assemble.mdp,WORKDIR=$WORKDIR submit_continu_32.pbs`
#q=`qsub -l walltime=04:00:00   -W depend=afternotok:$p -vGMXFILE=assemble.mdp,WORKDIR=$WORKDIR submit_continu_32.pbs`