#!/bin/bash

export WORKDIR=`pwd -P`

cd $WORKDIR

#g=`qsub -l walltime=01:00:00 -vGMXFILE=ppemst.mdp,WORKDIR=$WORKDIR submit_emst_1.pbs`
#h=`qsub -l walltime=02:00:00 -W depend=afterok:$g -vGMXFILE=ppemst.mdp,WORKDIR=$WORKDIR submit_emst_64.pbs`
#i=`qsub -l walltime=01:00:00 -W depend=afterok:$h -vGMXFILE=ppnvt.mdp,WORKDIR=$WORKDIR submit_nvt_1.pbs`
#j=`qsub -l walltime=02:00:00 -W depend=afterok:$i -vGMXFILE=ppnvt.mdp,WORKDIR=$WORKDIR submit_nvt_64.pbs`
#k=`qsub -l walltime=01:00:00   -W depend=afterok:$j  -vGMXFILE=ppnpt.mdp,WORKDIR=$WORKDIR submit_npt_1.pbs`
#l=`qsub -l walltime=02:00:00   -W depend=afterok:$k  -vGMXFILE=ppnpt.mdp,WORKDIR=$WORKDIR submit_npt_64.pbs`
#m=`qsub -l walltime=01:00:00   -vGMXFILE=ppmd.mdp,WORKDIR=$WORKDIR submit_md_1.pbs`
#n=`qsub -l walltime=01:00:00  -W depend=afterok:$m   -vGMXFILE=ppmd.mdp,WORKDIR=$WORKDIR submit_md_32.pbs`
o=`qsub -l walltime=72:00:00  -vGMXFILE=ppmd.mdp,WORKDIR=$WORKDIR submit_continu_32.pbs`
#o=`qsub -l walltime=01:00:00   -W depend=afterok:$n  -vGMXFILE=ppmd.mdp,WORKDIR=$WORKDIR submit_trjconv_1.pbs`