timestep 2.0 numsteps 100000 # 200 ps useConstantArea yes useflexiblecell yes set temperatur 310 structure system.psf parameters lib/par_all27_prot_lipid_c36.prm parameters lib/chol_new.str paraTypeCharmm on # INPUT coordinates equil1.coor extendedsystem equil1.xsc temperature 310 # OUTPUT outputenergies 500 outputtiming 500 outputpressure 500 binaryoutput no outputname equil2 restartname equil2 restartfreq 500 binaryrestart yes XSTFreq 500 dcdfile equil2.dcd dcdfreq 500 # CUT-OF splitpatch hydrogen hgroupcutoff 2.8 stepspercycle 8 switching on vdwForceSwitching on switchdist 11.0 cutoff 12.0 pairlistdist 14.0 #LJcorrection no # H-MATRIX # CONSTANT-T langevin on langevintemp $temperatur langevindamping 1.0 reassigntemp 310.0 reassignfreq 500 # CONSTANT-P langevinpiston on langevinpistontarget 1 langevinpistonperiod 75 langevinpistondecay 25 langevinpistontemp $temperatur strainrate 0. 0. 0. usegrouppressure yes # PME PME yes PMETolerance 10e-6 PMEInterpOrder 4 PMEGridSpacing 1.0 # MULTIPLE TIME-STEP fullelectfrequency 2 nonbondedfreq 1 # SHAKE/RATTLE rigidbonds all rigidtolerance 0.00001 rigiditerations 400 # 1-4's exclude scaled1-4 1-4scaling 1.0