timestep 2.0 numsteps 200000000 # 400 000 ps firsttimestep 150000000 useConstantRatio yes useflexiblecell yes set temperatur 310 structure system.psf parameters lib/par_all27_prot_lipid_c36.prm parameters lib/chol_new.str paraTypeCharmm on # INPUT velocities prod3.vel #coordinates equil3.coor coordinates prod3.coor extendedsystem prod3.xsc # OUTPUT outputenergies 5000 outputtiming 5000 outputpressure 5000 binaryoutput no outputname prod4 restartname prod4 restartfreq 5000 binaryrestart yes XSTFreq 5000 dcdfile prod4.dcd dcdfreq 5000 # CUT-OF splitpatch hydrogen hgroupcutoff 2.8 stepspercycle 8 switching on vdwForceSwitching on switchdist 11.0 cutoff 12.0 pairlistdist 14.0 #LJcorrection no # CONSTANT-T langevin on langevintemp $temperatur langevindamping 1.0 # CONSTANT-P langevinpiston on langevinpistontarget 1 langevinpistonperiod 200 langevinpistondecay 50 langevinpistontemp $temperatur strainrate 0. 0. 0. usegrouppressure yes # PME PME yes PMETolerance 10e-6 PMEInterpOrder 4 PMEGridSpacing 1.0 # MULTIPLE TIME-STEP fullelectfrequency 2 nonbondedfreq 1 # SHAKE/RATTLE rigidbonds all rigidtolerance 0.00001 rigiditerations 400 # 1-4's exclude scaled1-4 1-4scaling 1.0