Running solvate with arguments: system.psf system_large.pdb -o solvate -b 1.5 -minmax {{-0.1 -0.1 78} {62 65 89}} generating solute plus one replica of water... generating water residue lists... single water residue type, creating residue list... replicating 2 water segments, 1 by 2 by 1 Solvate 1.3 completed successfully.