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Package hyperref Info: Link coloring OFF on input line 6378. Package hyperref Info: Link coloring with OCG OFF on input line 6383. Package hyperref Info: PDF/A mode OFF on input line 6388. LaTeX Info: Redefining \ref on input line 6428. LaTeX Info: Redefining \pageref on input line 6432. \Hy@abspage=\count92 \c@Item=\count93 \c@Hfootnote=\count94 ) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/local/texlive/2017/texmf-dist/tex/latex/hyperref/hpdftex.def File: hpdftex.def 2017/03/14 v6.85a Hyperref driver for pdfTeX \Fld@listcount=\count95 \c@bookmark@seq@number=\count96 (/usr/local/texlive/2017/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty Package: rerunfilecheck 2016/05/16 v1.8 Rerun checks for auxiliary files (HO) Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2 82. ) \Hy@SectionHShift=\skip43 ) Package xr Info: IMPORTING LABELS FROM protrusion_ms.aux on input line 7. ! Undefined control sequence. ...ENTH-domain (PDB ID: 1H0A). All \ca /- and \cb /-atoms are sho... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ... (PDB ID: 1H0A). All \ca /- and \cb /-atoms are shown as spher... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...orange. The convex hull for the \ca /- and \cb /-atomic coordi... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ... convex hull for the \ca /- and \cb /-atomic coordinates is sh... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...e peripheral proteins (\periphcolor /) and the non-binding sur... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ... the non-binding surfaces (\tmcolor /). The horizontal axes sh... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...sion, measured as the number of \ca / and \cb / atoms within $... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...ured as the number of \ca / and \cb / atoms within $1 nm$. Ver... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...isely, the vertical axis shows $\OR {A, B,\hat {F}_{\mathrm {h... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ... protein density defined in~\matmet /. Error bars are 95\% con... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...isely, we show the comparisons $\OR {set,null,\hat {F}^{\mathr... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...f peripheral proteins (\periphcolor /) and the reference set (... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ... /) and the reference set (\tmcolor /), and $null$ represent t... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...protrusions as described in~\matmet /. Error bars are 95\% con... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...e peripheral proteins (\periphcolor /) and the reference sets ... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. .../) and the reference sets (\tmcolor /). We have differentiated... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...he convex hull (in blue) of the \ca / and \cb /-atoms of selec... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...hull (in blue) of the \ca / and \cb /-atoms of selected periph... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...l membrane binding domains. The \cb /-atoms of \emph {the Like... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...are shown as orange spheres and \cb /-atoms of experimentally ... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...s marked with a cross at 180\degree .\relax l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...in each family (measured at the \ca /-atom). Values greater th... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...$, and panel B the comparisons $\OR {A,B, \hat {F}_{\mathrm {h... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...m peripheral proteins (\periphcolor /) and from proteins in th... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...eins in the reference set (\tmcolor /). In panel B, the contra... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. ! Undefined control sequence. ...y the vertical axis denote $\ln \OR {\mathrm {peripheral}, \ma... l.7 \externalcitedocument {protrusion_ms} The control sequence at the end of the top line of your error message was never \def'ed. If you have misspelled it (e.g., `\hobx'), type `I' and the correct spelling (e.g., `I\hbox'). Otherwise just continue, and I'll forget about whatever was undefined. Package xc Info: IMPORTING LABELS FROM protrusion_ms.aux on input line 7. 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