#!/bin/bash
mkdir -p data/olga/run_3/seqcount_100000/sample_size_50/randomly_generated_repertoires/
for i in {1..50}
do
   new_seed=$(($i+170000+72))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_50/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

mkdir -p data/olga/run_3/seqcount_100000/sample_size_100/randomly_generated_repertoires/
for i in {1..100}
do
   new_seed=$(($i+180000+81))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_100/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

mkdir -p data/olga/run_3/seqcount_100000/sample_size_200/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+190000+90))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_200/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

mkdir -p data/olga/run_3/seqcount_100000/sample_size_400/randomly_generated_repertoires/
for i in {1..400}
do
   new_seed=$(($i+200000+99))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_400/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

mkdir -p data/olga/run_3/seqcount_100000/sample_size_800/randomly_generated_repertoires/
for i in {1..800}
do
   new_seed=$(($i+210000+108))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_800/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

mkdir -p data/olga/run_3/seqcount_100000/sample_size_1600/randomly_generated_repertoires/
for i in {1..1600}
do
   new_seed=$(($i+220000+117))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/seqcount_100000/sample_size_1600/randomly_generated_repertoires/rep_$i.tsv -n 100000 --seed=$new_seed
done

gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_50/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_100/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_200/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_400/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_800/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/seqcount_100000/sample_size_1600/randomly_generated_repertoires