#!/bin/bash
mkdir -p data/olga/run_3/expo_seqcounts/seqcount_33k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1160000+9))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_33k/randomly_generated_repertoires/rep_$i.tsv -n 33333 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_66k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1170000+18))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_66k/randomly_generated_repertoires/rep_$i.tsv -n 66666 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_133k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1180000+27))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_133k/randomly_generated_repertoires/rep_$i.tsv -n 133332 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_266k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1190000+36))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_266k/randomly_generated_repertoires/rep_$i.tsv -n 266664 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_533k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1200000+54))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_533k/randomly_generated_repertoires/rep_$i.tsv -n 533328 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_1066k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1210000+63))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_1066k/randomly_generated_repertoires/rep_$i.tsv -n 1066656 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_2133k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1220000+72))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_2133k/randomly_generated_repertoires/rep_$i.tsv -n 2133312 --seed=$new_seed
done

mkdir -p data/olga/run_3/expo_seqcounts/seqcount_4266k/randomly_generated_repertoires/
for i in {1..200}
do
   new_seed=$(($i+1230000+81))
   echo “###### Repertoire $i”
   olga-generate_sequences --humanTRB -o data/olga/run_3/expo_seqcounts/seqcount_4266k/randomly_generated_repertoires/rep_$i.tsv -n 4266624 --seed=$new_seed
done


gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_33k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_66k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_133k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_266k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_533k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_1066k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_2133k/randomly_generated_repertoires
gen_metadata_file --dir_path data/olga/run_3/expo_seqcounts/seqcount_4266k/randomly_generated_repertoires