(lnd_init_mct) :CLM land model initialization cesm1_0_4 Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in Successfully initialized run control settings define run: source = Community Land Model CLM4.0 model_version = cesm1_0_4 run type = initial case title = UNSET username = mde021 hostname = hexagon_intel input data files: PFT physiology = /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c110425.nc surface data = /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc flndtopo not set atm grid data = /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc land frac data = /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_tnx1v1_c120120 .nc fatmtopo not set snow optical properties file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc snow aging parameters file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c07041 6.nc glacier mask file NOT set initial data = NBF20TREXT_super.clm2.r.1980-01-01-00000.nc atmospheric forcing data is from cesm atm model RTM river data = /work/shared/noresm/inputdata/lnd/clm2/rtmdata/rdirc_0.5x0.5_simyr2000_c101124. nc Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd Large file support for output files is ON model physics parameters: flag for random perturbation test is not set CO2 volume mixing ratio (umol/mol) = 355.000000000000 land-ice albedos (unitless 0-1) = 0.800000000000000 0.550000000000000 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban traffic flux = F river runoff calculation performed only every 3 nsteps Snow capping will flow out in frozen river runoff maxpatch_pft = 17 allocate_all_vegpfts = T nsegspc = 20 Attempting to read alatlon from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc (GETFIL): attempting to find local file fracdata_1.9x2.5_tnx1v1_c120120.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_tnx1v1_c120120 .nc latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.0000000000000 358.750000000000 -90.0000000000000 -1.25000000000000 latlon_check lonc = 0.000000000000000E+000 357.500000000000 latlon_check latc = -90.0000000000000 90.0000000000000 latlon_check lonw = -1.25000000000000 356.250000000000 latlon_check lone = 1.25000000000000 358.750000000000 latlon_check lats = -90.0000000000000 89.0526315789474 latlon_check latn = -89.0526315789474 90.0000000000000 amask size/min/max 13824 0 1 Attempting to read llatlon from fsurdat (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc ncd_inqvid: variable LANDMASK is not on dataset latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.0000000000000 358.750000000000 -90.0000000000000 -1.25000000000000 latlon_check lonc = 0.000000000000000E+000 357.500000000000 latlon_check latc = -90.0000000000000 90.0000000000000 latlon_check lonw = -1.25000000000000 356.250000000000 latlon_check lone = 1.25000000000000 358.750000000000 latlon_check lats = -90.0000000000000 89.0526315789474 latlon_check latn = -89.0526315789474 90.0000000000000 initialize1: set llatlon =~ alatlon:continue 0.000000000000000E+000 0.000000000000000E+000 latlon_setsame: copying 144 96 atm decomp precompute anumg,nclumps,seglen1,avg_seglen,nsegspc= 5704 16 F 17.82500 20.00000 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5704 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 631 proc= 0 beg atmcell = 1 end atmcell = 360 total atmcells per proc = 360 proc= 0 atm ngseg = 631 atm nlseg = 38 proc= 0 nclumps = 1 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5704 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5704 Decomposition Characteristics clumps per process = 1 gsMap Characteristics lnd gsmap glo num of segs = 631 atm gsmap glo num of segs = 631 Attempting to read adomain from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc ncd_inqvid: variable LANDMASK is not on dataset ncd_inqvid: variable PFTDATA_MASK is not on dataset Attempting to read atm landfrac from fatmlndfrc (GETFIL): attempting to find local file fracdata_1.9x2.5_tnx1v1_c120120.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_tnx1v1_c120120 .nc adomain status: domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = atmgrid domain_check nbeg,nend = 1 360 domain_check lonc = 0.000000000000000E+000 357.500000000000 domain_check latc = -90.0000000000000 74.8421052631577 domain_check mask = 1 1 domain_check frac = 5.841100745039074E-003 1.00000000000000 domain_check topo = 0.000000000000000E+000 0.000000000000000E+000 domain_check area = 242.111419548087 58369.1305416964 domain_check pftm = 1 1 domain_check nara = 0.000000000000000E+000 0.000000000000000E+000 domain_check ntop = -9.999999616903162E+035 -9.999999616903162E+035 domain_check asca = 1.00000000000000 1.00000000000000 domain_check glcmask = 0 0 Attempting to read ldomain from fsurdat /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc ncd_inqvid: variable LANDMASK is not on dataset domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = lndgrid domain_check nbeg,nend = 1 360 domain_check lonc = 0.000000000000000E+000 357.500000000000 domain_check latc = -90.0000000000000 74.8421052631577 domain_check mask = 1 1 domain_check frac = -9.999999616903162E+035 -9.999999616903162E+035 domain_check topo = 0.000000000000000E+000 0.000000000000000E+000 domain_check area = 242.111419548087 58369.1305416964 domain_check pftm = 1 1 domain_check nara = 0.000000000000000E+000 0.000000000000000E+000 domain_check ntop = -9.999999616903162E+035 -9.999999616903162E+035 domain_check asca = 1.00000000000000 1.00000000000000 domain_check glcmask = 0 0 initialize1: downscale false, set ldomain =~ adomain Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc UrbanInput /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file pft-physiology.c110425.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c110425.nc Successfully read PFT physiological data Attempting to read surface boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc Successfully read surface boundary data decompInit_glcp gsmap [l,c,p] test passes for 1 decompInit_glcp gsmap [l,c,p] test passes for 2 decompInit_glcp gsmap [l,c,p] test passes for 3 decompInit_glcp gsmap [l,c,p] test passes for 4 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5704 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5704 total number of landunits = 8083 total number of columns = 13827 total number of pfts = 78499 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 631 lnd gsmap glo num of segs = 631 gce gsmap glo num of segs = 320 lun gsmap glo num of segs = 320 col gsmap glo num of segs = 320 pft gsmap glo num of segs = 320 proc= 0 beg atmcell = 1 end atmcell = 360 total atmcells per proc = 360 proc= 0 beg gridcell= 1 end gridcell= 360 total gridcells per proc= 360 proc= 0 beg landunit= 1 end landunit= 500 total landunits per proc= 500 proc= 0 beg column = 1 end column = 821 total columns per proc = 821 proc= 0 beg pft = 1 end pft = 4725 total pfts per proc = 4725 proc= 0 atm ngseg = 631 atm nlseg = 38 proc= 0 lnd ngseg = 631 lnd nlseg = 38 proc= 0 gce ngseg = 320 gce nlseg = 20 proc= 0 lun ngseg = 320 lun nlseg = 20 proc= 0 col ngseg = 320 col nlseg = 20 proc= 0 pft ngseg = 320 pft nlseg = 20 proc= 0 nclumps = 1 proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 360 total gridcells per clump= 360 proc= 0 clump no = 1 clump id= 1 beg landunit= 1 end landunit= 500 total landunits per clump = 500 proc= 0 clump no = 1 clump id= 1 beg column = 1 end column = 821 total columns per clump = 821 proc= 0 clump no = 1 clump id= 1 beg pft = 1 end pft = 4725 total pfts per clump = 4725 (lnd_init_mct) :time averaging the following flux fields over the coupling interval (lnd_init_mct) :Fall_taux:Fall_tauy:Fall_lat:Fall_sen:Fall_lwup:Fall_evap:Fall_swnet:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4 ---clm_ptrs_check: clm_ptrs_check: g index ranges - OK clm_ptrs_check: l index ranges - OK clm_ptrs_check: c index ranges - OK clm_ptrs_check: p index ranges - OK clm_ptrs_check: g mono increasing - OK clm_ptrs_check: l mono increasing - OK clm_ptrs_check: c mono increasing - OK clm_ptrs_check: p mono increasing - OK clm_ptrs_check: tree consistent - OK Attempting to initialize time invariant variables Attempting to read soil color, sand and clay boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc Successfully read fmax, soil color, sand and clay boundary data Attempting to read organic matter data ..... organicrd /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091 108.nc Successfully read organic matter data Attempting to read snow optical properties ..... (GETFIL): attempting to find local file snicar_optics_5bnd_c090915.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc Successfully read snow optical properties SNICAR: Mie single scatter albedos for direct-beam ice, rds=100um: 0.999988554642975 0.999681037198863 0.997607605675971 0.986497934250590 0.863625011159058 SNICAR: Mie single scatter albedos for diffuse ice, rds=100um: 0.999988688305644 0.999695704867021 0.997641261479875 0.988424521328148 0.874095913192701 SNICAR: Excluding OC aerosols from snow radiative transfer calculations SNICAR: Mie single scatter albedos for hydrophillic BC: 0.515945305512804 0.434313626536424 0.346103765992635 0.275522926330555 0.138576096442815 SNICAR: Mie single scatter albedos for hydrophobic BC: 0.287685315976181 0.186577277125224 0.123152237089201 8.834628859055429E-002 4.034215622693781E-002 SNICAR: Mie single scatter albedos for dust species 1: 0.978911057153050 0.994175916042451 0.993357580762207 0.992545751316266 0.953291550046772 SNICAR: Mie single scatter albedos for dust species 2: 0.943752248802793 0.984191668599419 0.989309063917025 0.991793946836264 0.982999590668913 SNICAR: Mie single scatter albedos for dust species 3: 0.904044530646049 0.964651629694555 0.968275809551522 0.972598419874107 0.977612418329876 SNICAR: Mie single scatter albedos for dust species 4: 0.849818195355416 0.940460325044343 0.948316305534169 0.952841175117807 0.955379528193802 Attempting to read snow aging parameters ..... (GETFIL): attempting to find local file snicar_drdt_bst_fit_60_c070416.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c07041 6.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c07041 6.nc Successfully read snow aging properties SNICAR: snowage tau for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 6.32058002982679 SNICAR: snowage kappa for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 1.56696894189530 SNICAR: snowage dr/dt_0 for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 5.48727550274226 Successfully initialized time invariant variables (GETFIL): attempting to find local file NBF20TREXT_super.clm2.r.1980-01-01-00000.nc (GETFIL): File NBF20TREXT_super.clm2.r.1980-01-01-00000.nc read in from: null:NBF20TREXT_super.clm2.r.1980-01-01-00000.nc (GETFIL): failed transferring file to local path: NBF20TREXT_super.clm2.r.1980-01-01-00000.nc