(lnd_init_mct) :CLM land model initialization cesm1_0_3 Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in Successfully initialized run control settings define run: source = Community Land Model CLM4.0 model_version = cesm1_0_3 run type = initial case title = UNSET username = tjiputra hostname = hexagon input data files: PFT physiology = /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c110425.nc surface data = /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc flndtopo not set atm grid data = /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc land frac data = /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc fatmtopo not set snow optical properties file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc snow aging parameters file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc glacier mask file NOT set initial data = NRCP60AERCNOC_f19_g16_01.clm2.r.2051-01-01-00000.nc atmospheric forcing data is from cesm atm model RTM river data = /work/shared/noresm/inputdata/lnd/clm2/rtmdata/rdirc_0.5x0.5_simyr2000_c101124.nc Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd Large file support for output files is ON model physics parameters: flag for random perturbation test is not set CO2 volume mixing ratio (umol/mol) = 355.0000000000000 land-ice albedos (unitless 0-1) = 0.8000000000000000 0.5500000000000000 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban traffic flux = F river runoff calculation performed only every 6 nsteps Snow capping will flow out in frozen river runoff maxpatch_pft = 17 allocate_all_vegpfts = T nsegspc = 20 Attempting to read alatlon from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc (GETFIL): attempting to find local file fracdata_1.9x2.5_gx1v6_c090206.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.00000000000000 358.7500000000000 -90.00000000000000 -1.250000000000000 latlon_check lonc = 0.000000000000000 357.5000000000000 latlon_check latc = -90.00000000000000 90.00000000000000 latlon_check lonw = -1.250000000000000 356.2500000000000 latlon_check lone = 1.250000000000000 358.7500000000000 latlon_check lats = -90.00000000000000 89.05263157894737 latlon_check latn = -89.05263157894737 90.00000000000000 amask size/min/max 13824 0 1 Attempting to read llatlon from fsurdat (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc ncd_inqvid: variable LANDMASK is not on dataset latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.00000000000000 358.7500000000000 -90.00000000000000 -1.250000000000000 latlon_check lonc = 0.000000000000000 357.5000000000000 latlon_check latc = -90.00000000000000 90.00000000000000 latlon_check lonw = -1.250000000000000 356.2500000000000 latlon_check lone = 1.250000000000000 358.7500000000000 latlon_check lats = -90.00000000000000 89.05263157894737 latlon_check latn = -89.05263157894737 90.00000000000000 initialize1: set llatlon =~ alatlon:continue 0.000000000000000 0.000000000000000 latlon_setsame: copying 144 96 atm decomp precompute anumg,nclumps,seglen1,avg_seglen,nsegspc= 5663 32 F 8.848437 20.00000 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 946 proc= 0 beg atmcell = 1 end atmcell = 177 total atmcells per proc = 177 proc= 0 atm ngseg = 946 atm nlseg = 34 proc= 0 nclumps = 1 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Decomposition Characteristics clumps per process = 1 gsMap Characteristics lnd gsmap glo num of segs = 946 atm gsmap glo num of segs = 946 Attempting to read adomain from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc ncd_inqvid: variable LANDMASK is not on dataset ncd_inqvid: variable PFTDATA_MASK is not on dataset Attempting to read atm landfrac from fatmlndfrc (GETFIL): attempting to find local file fracdata_1.9x2.5_gx1v6_c090206.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc adomain status: domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = atmgrid domain_check nbeg,nend = 1 177 domain_check lonc = 0.000000000000000 357.5000000000000 domain_check latc = -90.00000000000000 72.94736842105249 domain_check mask = 1 1 domain_check frac = 4.8993744795841065E-003 1.000000000000000 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 242.1114195480868 58369.13054169642 domain_check pftm = 1 1 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 domain_check glcmask = 0 0 Attempting to read ldomain from fsurdat /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc ncd_inqvid: variable LANDMASK is not on dataset domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = lndgrid domain_check nbeg,nend = 1 177 domain_check lonc = 0.000000000000000 357.5000000000000 domain_check latc = -90.00000000000000 72.94736842105249 domain_check mask = 1 1 domain_check frac = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 242.1114195480868 58369.13054169642 domain_check pftm = 1 1 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 domain_check glcmask = 0 0 initialize1: downscale false, set ldomain =~ adomain Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc UrbanInput /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file pft-physiology.c110425.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c110425.nc Successfully read PFT physiological data Attempting to read surface boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Successfully read surface boundary data decompInit_glcp gsmap [l,c,p] test passes for 1 decompInit_glcp gsmap [l,c,p] test passes for 2 decompInit_glcp gsmap [l,c,p] test passes for 3 decompInit_glcp gsmap [l,c,p] test passes for 4 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 total number of landunits = 8010 total number of columns = 13693 total number of pfts = 77245 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 946 lnd gsmap glo num of segs = 946 gce gsmap glo num of segs = 640 lun gsmap glo num of segs = 640 col gsmap glo num of segs = 640 pft gsmap glo num of segs = 640 proc= 0 beg atmcell = 1 end atmcell = 177 total atmcells per proc = 177 proc= 0 beg gridcell= 1 end gridcell= 177 total gridcells per proc= 177 proc= 0 beg landunit= 1 end landunit= 273 total landunits per proc= 273 proc= 0 beg column = 1 end column = 541 total columns per proc = 541 proc= 0 beg pft = 1 end pft = 2461 total pfts per proc = 2461 proc= 0 atm ngseg = 946 atm nlseg = 34 proc= 0 lnd ngseg = 946 lnd nlseg = 34 proc= 0 gce ngseg = 640 gce nlseg = 20 proc= 0 lun ngseg = 640 lun nlseg = 20 proc= 0 col ngseg = 640 col nlseg = 20 proc= 0 pft ngseg = 640 pft nlseg = 20 proc= 0 nclumps = 1 proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 177 total gridcells per clump= 177 proc= 0 clump no = 1 clump id= 1 beg landunit= 1 end landunit= 273 total landunits per clump = 273 proc= 0 clump no = 1 clump id= 1 beg column = 1 end column = 541 total columns per clump = 541 proc= 0 clump no = 1 clump id= 1 beg pft = 1 end pft = 2461 total pfts per clump = 2461 (lnd_init_mct) :time averaging the following flux fields over the coupling interval (lnd_init_mct) :Fall_taux:Fall_tauy:Fall_lat:Fall_sen:Fall_lwup:Fall_evap:Fall_swnet:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4 ---clm_ptrs_check: clm_ptrs_check: g index ranges - OK clm_ptrs_check: l index ranges - OK clm_ptrs_check: c index ranges - OK clm_ptrs_check: p index ranges - OK clm_ptrs_check: g mono increasing - OK clm_ptrs_check: l mono increasing - OK clm_ptrs_check: c mono increasing - OK clm_ptrs_check: p mono increasing - OK clm_ptrs_check: tree consistent - OK Attempting to initialize time invariant variables Attempting to read soil color, sand and clay boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Successfully read fmax, soil color, sand and clay boundary data Attempting to read organic matter data ..... organicrd /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Successfully read organic matter data Attempting to read snow optical properties ..... (GETFIL): attempting to find local file snicar_optics_5bnd_c090915.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc Successfully read snow optical properties SNICAR: Mie single scatter albedos for direct-beam ice, rds=100um: 0.9999885546429754 0.9996810371988630 0.9976076056759708 0.9864979342505897 0.8636250111590581 SNICAR: Mie single scatter albedos for diffuse ice, rds=100um: 0.9999886883056436 0.9996957048670213 0.9976412614798745 0.9884245213281482 0.8740959131927010 SNICAR: Excluding OC aerosols from snow radiative transfer calculations SNICAR: Mie single scatter albedos for hydrophillic BC: 0.5159453055128044 0.4343136265364245 0.3461037659926354 0.2755229263305546 0.1385760964428150 SNICAR: Mie single scatter albedos for hydrophobic BC: 0.2876853159761815 0.1865772771252239 0.1231522370892010 8.8346288590554295E-002 4.0342156226937813E-002 SNICAR: Mie single scatter albedos for dust species 1: 0.9789110571530497 0.9941759160424509 0.9933575807622067 0.9925457513162657 0.9532915500467720 SNICAR: Mie single scatter albedos for dust species 2: 0.9437522488027930 0.9841916685994192 0.9893090639170248 0.9917939468362638 0.9829995906689125 SNICAR: Mie single scatter albedos for dust species 3: 0.9040445306460489 0.9646516296945549 0.9682758095515216 0.9725984198741066 0.9776124183298763 SNICAR: Mie single scatter albedos for dust species 4: 0.8498181953554165 0.9404603250443428 0.9483163055341691 0.9528411751178069 0.9553795281938021 Attempting to read snow aging parameters ..... (GETFIL): attempting to find local file snicar_drdt_bst_fit_60_c070416.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc Successfully read snow aging properties SNICAR: snowage tau for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 6.320580029826786 SNICAR: snowage kappa for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 1.566968941895301 SNICAR: snowage dr/dt_0 for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 5.487275502742264 Successfully initialized time invariant variables (GETFIL): attempting to find local file NRCP60AERCNOC_f19_g16_01.clm2.r.2051-01-01-00000.nc (GETFIL): using NRCP60AERCNOC_f19_g16_01.clm2.r.2051-01-01-00000.nc in current working directory ******** CLM Time Manager Configuration ******** Calendar type: NO_LEAP Timestep size (seconds): 1800 Start date (yr mon day tod): 2051 1 1 0 Stop date (yr mon day tod): 2052 1 1 0 Reference date (yr mon day tod): 2051 1 1 0 Current step number: 0 Ending step number: -999999999 Current date (yr mon day tod): 2051 1 1 0 ************************************************ Attempting to initialize RTM rtm tracers = 2 LIQ:ICE (GETFIL): attempting to find local file rdirc_0.5x0.5_simyr2000_c101124.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/rtmdata/rdirc_0.5x0.5_simyr2000_c101124.nc Read in RTM file name: /work/shared/noresm/inputdata/lnd/clm2/rtmdata/rdirc_0.5x0.5_simyr2000_c101124.nc Values for rtmlon/rtmlat: 720 360 Successfully read RTM dimensions RTM netcdf river direction file successfully read MAP_SETMAPSAR: conservation check passed global sum input field = 0.3593561283E+05 global sum output field = 0.3593561283E+05 rtm cells and basins total = 109217 24706 rtm cells per basin avg/max = 4 2467 rtm cells per pe min/max = 2323 3765 basins per pe min/max = 2 1511 total runoff cells numr = 109217 numrl = 84511 numro = 24706 rtm decomp info proc = 0 begr = 1 endr = 3469 numr = 3469 proc = 0 begrl= 1 endrl= 3368 numrl= 3368 proc = 0 begro= 1 endro= 101 numro= 101 rtm max timestep = 1867.144799932026 (sec) for cfl_scale = 0.1000000000000000 Rtmini complete Successfully initialized RTM Initializing variables for time accumulation ..... ------------------------------------------------------------ Accumulated fields No Name Units Type Period Inival Description _______________________________________________________________________ 1 TREFAV K timeavg 2 0. average over an hour of 2-m temperature 2 TREFAV_U K timeavg 2 0. average over an hour of urban 2-m temper 3 TREFAV_R K timeavg 2 0. average over an hour of rural 2-m temper 4 T_VEG24 K runmean 48 0. 24hr average of vegetation temperature 5 T_VEG240 K runmean 480 0. 240hr average of vegetation temperature 6 FSD24 W/m2 runmean 48 0. 24hr average of direct solar radiation 7 FSD240 W/m2 runmean 480 0. 240hr average of direct solar radiation 8 FSI24 W/m2 runmean 48 0. 24hr average of diffuse solar radiation 9 FSI240 W/m2 runmean 480 0. 240hr average of diffuse solar radiation 10 FSUN24 fraction runmean 48 0. 24hr average of diffuse solar radiation 11 FSUN240 fraction runmean 480 0. 240hr average of diffuse solar radiation 12 LAIP m2/m2 runmean 1 0. leaf area index average over timestep _______________________________________________________________________ ------------------------------------------------------------ Successfully initialized variables for accumulation Attempting to read pft dynamic landuse data ..... (GETFIL): attempting to find local file surfdata.pftdyn_1.9x2.5_rcp6.0_simyr1850-2100_c100813.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata.pftdyn_1.9x2.5_rcp6.0_simyr1850-2100_c100813.nc reading restart file NRCP60AERCNOC_f19_g16_01.clm2.r.2051-01-01-00000.nc Reading restart dataset ------------------------------------------------------------ Successfully read restart data for restart run ndepdyn stream settings: stream_year_first_ndep = 1850 stream_year_last_ndep = 2100 model_year_align_ndep = 1850 stream_fldFileName_ndep = /work/shared/noresm/inputdata/lnd/clm2/ndepdata/fndep_clm_rcp6.0_simyr1849-2106_1.9x2.5_c100810.nc (shr_stream_set) size of filename = 1 (shr_stream_set) filename = /work/shared/noresm/inputdata/lnd/clm2/ndepdata/fndep_clm_rcp6.0_simyr1849-2106_1.9x2.5_c100810.nc (shr_strdata_print) ---------------------------------------------------------- (shr_strdata_print) name = CLMNDEP data (shr_strdata_print) dataMode = NULL (shr_strdata_print) domainFile = null (shr_strdata_print) nxg = 144 (shr_strdata_print) nyg = 96 (shr_strdata_print) calendar = NO_LEAP (shr_strdata_print) io_type = 6 (shr_strdata_print) eccen = 1.000000E+36 (shr_strdata_print) mvelpp = 1.000000E+36 (shr_strdata_print) lambm0 = 1.000000E+36 (shr_strdata_print) obliqr = 1.000000E+36 (shr_strdata_print) nstreams = 1 (shr_strdata_print) pio_iotype = 6 (shr_strdata_print) streams ( 1) = null (shr_strdata_print) taxMode ( 1) = extend (shr_strdata_print) dtlimit ( 1) = 1.000000E+30 (shr_strdata_print) strnxg ( 1) = 144 (shr_strdata_print) strnyg ( 1) = 96 (shr_strdata_print) dofill ( 1) = F (shr_strdata_print) fillalgo( 1) = none (shr_strdata_print) fillmask( 1) = nomask (shr_strdata_print) fillread( 1) = NOT_SET (shr_strdata_print) fillwrit( 1) = NOT_SET (shr_strdata_print) domaps ( 1) = F (shr_strdata_print) mapalgo ( 1) = bilinear (shr_strdata_print) mapmask ( 1) = dstmask (shr_strdata_print) mapread ( 1) = NOT_SET (shr_strdata_print) mapwrit ( 1) = NOT_SET (shr_strdata_print) tintalgo( 1) = linear (shr_strdata_print) (shr_strdata_print) nvectors = 0 (shr_strdata_print) ----------------------------------------------------------