Index of /10.11582_2015.00010/rvsdg-cfg/experiments/cfgs/hmmer

	Name	Last modified	Size	Description
	Parent Directory		-
	AddToHistogram.dot	2015-03-02 11:55	7.1K
	AddToHistogram.dot.md5	2015-03-02 11:57	32
	AlignmentBootstrap.dot	2015-03-02 11:55	3.0K
	AlignmentBootstrap.dot.md5	2015-03-02 11:57	32
	AlignmentHomogenousGapsym.dot	2015-03-02 11:54	3.3K
	AlignmentHomogenousGapsym.dot.md5	2015-03-02 11:57	32
	AlignmentIdentityBySampling.dot	2015-03-02 11:55	2.6K
	AlignmentIdentityBySampling.dot.md5	2015-03-02 11:57	32
	AlignmentShuffle.dot	2015-03-02 11:54	4.8K
	AlignmentShuffle.dot.md5	2015-03-02 11:57	32
	AllocAlignment.dot	2015-03-02 11:54	3.1K
	AllocAlignment.dot.md5	2015-03-02 11:57	32
	AllocFancyAli.dot	2015-03-02 11:55	1.6K
	AllocFancyAli.dot.md5	2015-03-02 11:57	32
	AllocHistogram.dot	2015-03-02 11:54	3.2K
	AllocHistogram.dot.md5	2015-03-02 11:57	32
	AllocPhylo.dot	2015-03-02 11:55	3.4K
	AllocPhylo.dot.md5	2015-03-02 11:57	32
	AllocPlan7.dot	2015-03-02 11:54	697
	AllocPlan7.dot.md5	2015-03-02 11:57	32
	AllocPlan7Body.dot	2015-03-02 11:55	17K
	AllocPlan7Body.dot.md5	2015-03-02 11:57	32
	AllocPlan7Matrix.dot	2015-03-02 11:54	2.6K
	AllocPlan7Matrix.dot.md5	2015-03-02 11:57	32
	AllocPlan7Shell.dot	2015-03-02 11:55	6.6K
	AllocPlan7Shell.dot.md5	2015-03-02 11:57	32
	AllocShadowMatrix.dot	2015-03-02 11:54	6.7K
	AllocShadowMatrix.dot.md5	2015-03-02 11:57	32
	AllocTophits.dot	2015-03-02 11:55	1.7K
	AllocTophits.dot.md5	2015-03-02 11:57	32
	AlphabetType2String.dot	2015-03-02 11:55	1.2K
	AlphabetType2String.dot.md5	2015-03-02 11:57	32
	BlosumWeights.dot	2015-03-02 11:54	4.1K
	BlosumWeights.dot.md5	2015-03-02 11:57	32
	Byteswap.dot	2015-03-02 11:55	2.1K
	Byteswap.dot.md5	2015-03-02 11:57	32
	Cluster.dot	2015-03-02 11:55	38K
	Cluster.dot.md5	2015-03-02 11:57	32
	CompareMultAlignments.dot	2015-03-02 11:55	3.2K
	CompareMultAlignments.dot.md5	2015-03-02 11:57	32
	ComparePairAlignments.dot	2015-03-02 11:55	3.9K
	ComparePairAlignments.dot.md5	2015-03-02 11:57	32
	CompareRefMultAlignments.dot	2015-03-02 11:55	3.2K
	CompareRefMultAlignments.dot.md5	2015-03-02 11:57	32
	CompareRefPairAlignments.dot	2015-03-02 11:55	4.8K
	CompareRefPairAlignments.dot.md5	2015-03-02 11:57	32
	CreateFancyAli.dot	2015-03-02 11:54	25K
	CreateFancyAli.dot.md5	2015-03-02 11:57	32
	CreatePlan7Matrix.dot	2015-03-02 11:55	6.6K
	CreatePlan7Matrix.dot.md5	2015-03-02 11:57	32
	DAdd.dot	2015-03-02 11:54	1.1K
	DAdd.dot.md5	2015-03-02 11:57	32
	DArgMax.dot	2015-03-02 11:54	1.5K
	DArgMax.dot.md5	2015-03-02 11:57	32
	DArgMin.dot	2015-03-02 11:55	1.5K
	DArgMin.dot.md5	2015-03-02 11:57	32
	DChoose.dot	2015-03-02 11:55	1.9K
	DChoose.dot.md5	2015-03-02 11:57	32
	DCopy.dot	2015-03-02 11:55	1.1K
	DCopy.dot.md5	2015-03-02 11:57	32
	DDot.dot	2015-03-02 11:54	1.3K
	DDot.dot.md5	2015-03-02 11:57	32
	DExp.dot	2015-03-02 11:55	1.1K
	DExp.dot.md5	2015-03-02 11:57	32
	DLog.dot	2015-03-02 11:54	1.7K
	DLog.dot.md5	2015-03-02 11:57	32
	DLogSum.dot	2015-03-02 11:55	2.3K
	DLogSum.dot.md5	2015-03-02 11:57	32
	DMX2Alloc.dot	2015-03-02 11:55	1.8K
	DMX2Alloc.dot.md5	2015-03-02 11:57	32
	DMX2Free.dot	2015-03-02 11:54	454
	DMX2Free.dot.md5	2015-03-02 11:57	32
	DMax.dot	2015-03-02 11:54	1.8K
	DMax.dot.md5	2015-03-02 11:57	32
	DMin.dot	2015-03-02 11:55	1.8K
	DMin.dot.md5	2015-03-02 11:57	32
	DNorm.dot	2015-03-02 11:55	2.4K
	DNorm.dot.md5	2015-03-02 11:57	32
	DScale.dot	2015-03-02 11:54	1.0K
	DScale.dot.md5	2015-03-02 11:57	32
	DSet.dot	2015-03-02 11:54	1.0K
	DSet.dot.md5	2015-03-02 11:57	32
	DSum.dot	2015-03-02 11:55	1.2K
	DSum.dot.md5	2015-03-02 11:57	32
	DealignedLength.dot	2015-03-02 11:54	1.8K
	DealignedLength.dot.md5	2015-03-02 11:57	32
	DedigitizeSequence.dot	2015-03-02 11:54	2.0K
	DedigitizeSequence.dot.md5	2015-03-02 11:57	32
	DefaultCodonBias.dot	2015-03-02 11:54	20K
	DefaultCodonBias.dot.md5	2015-03-02 11:57	32
	DefaultGeneticCode.dot	2015-03-02 11:55	1.9K
	DefaultGeneticCode.dot.md5	2015-03-02 11:57	32
	DegenerateSymbolScore.dot	2015-03-02 11:54	2.8K
	DegenerateSymbolScore.dot.md5	2015-03-02 11:57	32
	DetermineAlphabet.dot	2015-03-02 11:55	5.3K
	DetermineAlphabet.dot.md5	2015-03-02 11:57	32
	Die.dot	2015-03-02 11:55	1.2K
	Die.dot.md5	2015-03-02 11:57	32
	DigitizeAlignment.dot	2015-03-02 11:54	5.1K
	DigitizeAlignment.dot.md5	2015-03-02 11:57	32
	DigitizeSequence.dot	2015-03-02 11:55	2.3K
	DigitizeSequence.dot.md5	2015-03-02 11:57	32
	DisplayPlan7Matrix.dot	2015-03-02 11:55	9.6K
	DisplayPlan7Matrix.dot.md5	2015-03-02 11:57	32
	DisplayPlan7PostAlign.dot	2015-03-02 11:55	47K
	DisplayPlan7PostAlign.dot.md5	2015-03-02 11:57	32
	DisplayPlan7Posteriors.dot	2015-03-02 11:55	1.2K
	DisplayPlan7Posteriors.dot.md5	2015-03-02 11:57	32
	EPSWriteSmallMSA.dot	2015-03-02 11:55	9.9K
	EPSWriteSmallMSA.dot.md5	2015-03-02 11:57	32
	EVDBasicFit.dot	2015-03-02 11:55	6.9K
	EVDBasicFit.dot.md5	2015-03-02 11:57	32
	EVDCensoredFit.dot	2015-03-02 11:55	14K
	EVDCensoredFit.dot.md5	2015-03-02 11:57	32
	EVDDensity.dot	2015-03-02 11:54	940
	EVDDensity.dot.md5	2015-03-02 11:57	32
	EVDDistribution.dot	2015-03-02 11:55	616
	EVDDistribution.dot.md5	2015-03-02 11:57	32
	EVDMaxLikelyFit.dot	2015-03-02 11:55	13K
	EVDMaxLikelyFit.dot.md5	2015-03-02 11:57	32
	EVDrandom.dot	2015-03-02 11:55	1.2K
	EVDrandom.dot.md5	2015-03-02 11:57	32
	EmitConsensusSequence.dot	2015-03-02 11:55	17K
	EmitConsensusSequence.dot.md5	2015-03-02 11:57	32
	EmitSequence.dot	2015-03-02 11:54	25K
	EmitSequence.dot.md5	2015-03-02 11:57	32
	EnvFileOpen.dot	2015-03-02 11:55	4.3K
	EnvFileOpen.dot.md5	2015-03-02 11:57	32
	ExponentialRandom.dot	2015-03-02 11:55	894
	ExponentialRandom.dot.md5	2015-03-02 11:57	32
	ExtremeValueE.dot	2015-03-02 11:54	535
	ExtremeValueE.dot.md5	2015-03-02 11:57	32
	ExtremeValueFitHistogram.dot	2015-03-02 11:55	14K
	ExtremeValueFitHistogram.dot.md5	2015-03-02 11:57	32
	ExtremeValueP.dot	2015-03-02 11:55	2.5K
	ExtremeValueP.dot.md5	2015-03-02 11:57	32
	ExtremeValueP2.dot	2015-03-02 11:54	1.3K
	ExtremeValueP2.dot.md5	2015-03-02 11:57	32
	ExtremeValueSetHistogram.dot	2015-03-02 11:55	7.3K
	ExtremeValueSetHistogram.dot.md5	2015-03-02 11:57	32
	FAdd.dot	2015-03-02 11:54	1.1K
	FAdd.dot.md5	2015-03-02 11:57	32
	FArgMax.dot	2015-03-02 11:55	1.5K
	FArgMax.dot.md5	2015-03-02 11:57	32
	FArgMin.dot	2015-03-02 11:55	1.5K
	FArgMin.dot.md5	2015-03-02 11:57	32
	FChoose.dot	2015-03-02 11:55	1.9K
	FChoose.dot.md5	2015-03-02 11:57	32
	FCopy.dot	2015-03-02 11:55	1.1K
	FCopy.dot.md5	2015-03-02 11:57	32
	FDot.dot	2015-03-02 11:55	1.3K
	FDot.dot.md5	2015-03-02 11:57	32
	FExp.dot	2015-03-02 11:54	1.1K
	FExp.dot.md5	2015-03-02 11:57	32
	FLog.dot	2015-03-02 11:55	1.7K
	FLog.dot.md5	2015-03-02 11:57	32
	FLogSum.dot	2015-03-02 11:55	2.3K
	FLogSum.dot.md5	2015-03-02 11:57	32
	FMX2Alloc.dot	2015-03-02 11:55	1.8K
	FMX2Alloc.dot.md5	2015-03-02 11:57	32
	FMX2Free.dot	2015-03-02 11:55	454
	FMX2Free.dot.md5	2015-03-02 11:57	32
	FMX2Multiply.dot	2015-03-02 11:55	2.8K
	FMX2Multiply.dot.md5	2015-03-02 11:57	32
	FMax.dot	2015-03-02 11:55	1.8K
	FMax.dot.md5	2015-03-02 11:57	32
	FMin.dot	2015-03-02 11:54	1.8K
	FMin.dot.md5	2015-03-02 11:57	32
	FNorm.dot	2015-03-02 11:55	2.4K
	FNorm.dot.md5	2015-03-02 11:57	32
	FScale.dot	2015-03-02 11:54	1.0K
	FScale.dot.md5	2015-03-02 11:57	32
	FSet.dot	2015-03-02 11:55	1.0K
	FSet.dot.md5	2015-03-02 11:57	32
	FSum.dot	2015-03-02 11:55	1.2K
	FSum.dot.md5	2015-03-02 11:57	32
	FileAddSuffix.dot	2015-03-02 11:55	1.2K
	FileAddSuffix.dot.md5	2015-03-02 11:57	32
	FileConcat.dot	2015-03-02 11:55	1.3K
	FileConcat.dot.md5	2015-03-02 11:57	32
	FileDirname.dot	2015-03-02 11:54	3.1K
	FileDirname.dot.md5	2015-03-02 11:57	32
	FileExists.dot	2015-03-02 11:54	894
	FileExists.dot.md5	2015-03-02 11:57	32
	FileSameDirectory.dot	2015-03-02 11:55	2.6K
	FileSameDirectory.dot.md5	2015-03-02 11:57	32
	FileTail.dot	2015-03-02 11:55	2.4K
	FileTail.dot.md5	2015-03-02 11:57	32
	FilterAlignment.dot	2015-03-02 11:54	6.3K
	FilterAlignment.dot.md5	2015-03-02 11:57	32
	Free2DArray.dot	2015-03-02 11:55	1.7K
	Free2DArray.dot.md5	2015-03-02 11:57	32
	Free3DArray.dot	2015-03-02 11:54	2.8K
	Free3DArray.dot.md5	2015-03-02 11:57	32
	FreeAlignment.dot	2015-03-02 11:55	4.4K
	FreeAlignment.dot.md5	2015-03-02 11:57	32
	FreeFancyAli.dot	2015-03-02 11:54	3.0K
	FreeFancyAli.dot.md5	2015-03-02 11:57	32
	FreeHistogram.dot	2015-03-02 11:55	732
	FreeHistogram.dot.md5	2015-03-02 11:57	32
	FreeIntStack.dot	2015-03-02 11:55	894
	FreeIntStack.dot.md5	2015-03-02 11:57	32
	FreePhylo.dot	2015-03-02 11:54	1.1K
	FreePhylo.dot.md5	2015-03-02 11:57	32
	FreePlan7.dot	2015-03-02 11:55	11K
	FreePlan7.dot.md5	2015-03-02 11:57	32
	FreePlan7Matrix.dot	2015-03-02 11:55	940
	FreePlan7Matrix.dot.md5	2015-03-02 11:57	32
	FreeSequence.dot	2015-03-02 11:54	1.4K
	FreeSequence.dot.md5	2015-03-02 11:57	32
	FreeShadowMatrix.dot	2015-03-02 11:54	1.3K
	FreeShadowMatrix.dot.md5	2015-03-02 11:57	32
	FreeTophits.dot	2015-03-02 11:55	3.3K
	FreeTophits.dot.md5	2015-03-02 11:57	32
	FullSortTophits.dot	2015-03-02 11:54	2.4K
	FullSortTophits.dot.md5	2015-03-02 11:57	32
	GCGBinaryToSequence.dot	2015-03-02 11:55	5.0K
	GCGBinaryToSequence.dot.md5	2015-03-02 11:57	32
	GCGMultchecksum.dot	2015-03-02 11:55	1.5K
	GCGMultchecksum.dot.md5	2015-03-02 11:57	32
	GCGchecksum.dot	2015-03-02 11:55	1.5K
	GCGchecksum.dot.md5	2015-03-02 11:57	32
	GKIFree.dot	2015-03-02 11:54	2.9K
	GKIFree.dot.md5	2015-03-02 11:57	32
	GKIInit.dot	2015-03-02 11:55	535
	GKIInit.dot.md5	2015-03-02 11:57	32
	GKIKeyIndex.dot	2015-03-02 11:55	1.8K
	GKIKeyIndex.dot.md5	2015-03-02 11:57	32
	GKIStatus.dot	2015-03-02 11:55	4.3K
	GKIStatus.dot.md5	2015-03-02 11:57	32
	GKIStoreKey.dot	2015-03-02 11:54	3.4K
	GKIStoreKey.dot.md5	2015-03-02 11:57	32
	GSCWeights.dot	2015-03-02 11:54	6.9K
	GSCWeights.dot.md5	2015-03-02 11:57	32
	GSIAddFileToIndex.dot	2015-03-02 11:55	2.9K
	GSIAddFileToIndex.dot.md5	2015-03-02 11:57	32
	GSIAddKeyToIndex.dot	2015-03-02 11:55	3.5K
	GSIAddKeyToIndex.dot.md5	2015-03-02 11:57	32
	GSIAllocIndex.dot	2015-03-02 11:55	2.2K
	GSIAllocIndex.dot.md5	2015-03-02 11:57	32
	GSIClose.dot	2015-03-02 11:55	373
	GSIClose.dot.md5	2015-03-02 11:57	32
	GSIFreeIndex.dot	2015-03-02 11:55	1.3K
	GSIFreeIndex.dot.md5	2015-03-02 11:57	32
	GSIGetOffset.dot	2015-03-02 11:55	6.1K
	GSIGetOffset.dot.md5	2015-03-02 11:57	32
	GSIGetRecord.dot	2015-03-02 11:54	4.7K
	GSIGetRecord.dot.md5	2015-03-02 11:57	32
	GSIOpen.dot	2015-03-02 11:55	4.6K
	GSIOpen.dot.md5	2015-03-02 11:57	32
	GSISortIndex.dot	2015-03-02 11:55	535
	GSISortIndex.dot.md5	2015-03-02 11:57	32
	GSIWriteFileRecord.dot	2015-03-02 11:55	4.1K
	GSIWriteFileRecord.dot.md5	2015-03-02 11:57	32
	GSIWriteHeader.dot	2015-03-02 11:55	3.9K
	GSIWriteHeader.dot.md5	2015-03-02 11:57	32
	GSIWriteIndex.dot	2015-03-02 11:55	3.3K
	GSIWriteIndex.dot.md5	2015-03-02 11:57	32
	GSIWriteKeyRecord.dot	2015-03-02 11:54	4.1K
	GSIWriteKeyRecord.dot.md5	2015-03-02 11:57	32
	Gammln.dot	2015-03-02 11:54	3.4K
	Gammln.dot.md5	2015-03-02 11:57	32
	GaussianFitHistogram.dot	2015-03-02 11:55	10K
	GaussianFitHistogram.dot.md5	2015-03-02 11:57	32
	GaussianSetHistogram.dot	2015-03-02 11:55	7.8K
	GaussianSetHistogram.dot.md5	2015-03-02 11:57	32
	Gaussrandom.dot	2015-03-02 11:55	12K
	Gaussrandom.dot.md5	2015-03-02 11:57	32
	GetRankedHit.dot	2015-03-02 11:54	8.3K
	GetRankedHit.dot.md5	2015-03-02 11:57	32
	Getline.dot	2015-03-02 11:54	2.0K
	Getline.dot.md5	2015-03-02 11:57	32
	Getopt.dot	2015-03-02 11:55	21K
	Getopt.dot.md5	2015-03-02 11:57	32
	Getword.dot	2015-03-02 11:54	4.9K
	Getword.dot.md5	2015-03-02 11:57	32
	GrowTophits.dot	2015-03-02 11:55	940
	GrowTophits.dot.md5	2015-03-02 11:57	32
	GuessAlignmentSeqtype.dot	2015-03-02 11:55	4.2K
	GuessAlignmentSeqtype.dot.md5	2015-03-02 11:57	32
	HMMERBanner.dot	2015-03-02 11:54	1.5K
	HMMERBanner.dot.md5	2015-03-02 11:57	32
	HMMFileClose.dot	2015-03-02 11:55	1.0K
	HMMFileClose.dot.md5	2015-03-02 11:57	32
	HMMFileOpen.dot	2015-03-02 11:55	20K
	HMMFileOpen.dot.md5	2015-03-02 11:57	32
	HMMFilePositionByIndex.dot	2015-03-02 11:54	1.8K
	HMMFilePositionByIndex.dot.md5	2015-03-02 11:57	32
	HMMFilePositionByName.dot	2015-03-02 11:54	1.8K
	HMMFilePositionByName.dot.md5	2015-03-02 11:57	32
	HMMFileRead.dot	2015-03-02 11:55	1.3K
	HMMFileRead.dot.md5	2015-03-02 11:57	32
	HMMFileRewind.dot	2015-03-02 11:55	292
	HMMFileRewind.dot.md5	2015-03-02 11:57	32
	ILogsum.dot	2015-03-02 11:55	2.5K
	ILogsum.dot.md5	2015-03-02 11:57	32
	ImposeMasterTrace.dot	2015-03-02 11:55	16K
	ImposeMasterTrace.dot.md5	2015-03-02 11:57	32
	IncompleteGamma.dot	2015-03-02 11:54	8.9K
	IncompleteGamma.dot.md5	2015-03-02 11:57	32
	InitAinfo.dot	2015-03-02 11:55	2.0K
	InitAinfo.dot.md5	2015-03-02 11:57	32
	InitIntStack.dot	2015-03-02 11:55	1.1K
	InitIntStack.dot.md5	2015-03-02 11:57	32
	IsBlankline.dot	2015-03-02 11:55	1.1K
	IsBlankline.dot.md5	2015-03-02 11:57	32
	IsInt.dot	2015-03-02 11:55	5.5K
	IsInt.dot.md5	2015-03-02 11:57	32
	IsReal.dot	2015-03-02 11:55	5.6K
	IsReal.dot.md5	2015-03-02 11:57	32
	Lawless416.dot	2015-03-02 11:55	6.0K
	Lawless416.dot.md5	2015-03-02 11:57	32
	Lawless422.dot	2015-03-02 11:55	7.5K
	Lawless422.dot.md5	2015-03-02 11:57	32
	Linefit.dot	2015-03-02 11:55	5.4K
	Linefit.dot.md5	2015-03-02 11:57	32
	LogNorm.dot	2015-03-02 11:55	4.4K
	LogNorm.dot.md5	2015-03-02 11:57	32
	LogSum.dot	2015-03-02 11:55	2.0K
	LogSum.dot.md5	2015-03-02 11:57	32
	Logp_cvec.dot	2015-03-02 11:54	3.8K
	Logp_cvec.dot.md5	2015-03-02 11:57	32
	MSAAddComment.dot	2015-03-02 11:55	2.4K
	MSAAddComment.dot.md5	2015-03-02 11:57	32
	MSAAddGF.dot	2015-03-02 11:55	3.6K
	MSAAddGF.dot.md5	2015-03-02 11:57	32
	MSAAddGS.dot	2015-03-02 11:55	9.5K
	MSAAddGS.dot.md5	2015-03-02 11:57	32
	MSAAlloc.dot	2015-03-02 11:55	12K
	MSAAlloc.dot.md5	2015-03-02 11:57	32
	MSAAppendGC.dot	2015-03-02 11:54	5.2K
	MSAAppendGC.dot.md5	2015-03-02 11:57	32
	MSAAppendGR.dot	2015-03-02 11:54	7.5K
	MSAAppendGR.dot.md5	2015-03-02 11:57	32
	MSAAverageSequenceLength.dot	2015-03-02 11:54	1.7K
	MSAAverageSequenceLength.dot.md5	2015-03-02 11:57	32
	MSAExpand.dot	2015-03-02 11:55	19K
	MSAExpand.dot.md5	2015-03-02 11:57	32
	MSAFileClose.dot	2015-03-02 11:55	1.6K
	MSAFileClose.dot.md5	2015-03-02 11:57	32
	MSAFileFormat.dot	2015-03-02 11:55	1.6K
	MSAFileFormat.dot.md5	2015-03-02 11:57	32
	MSAFileGetLine.dot	2015-03-02 11:54	1.0K
	MSAFileGetLine.dot.md5	2015-03-02 11:57	32
	MSAFileOpen.dot	2015-03-02 11:55	7.8K
	MSAFileOpen.dot.md5	2015-03-02 11:57	32
	MSAFilePositionByIndex.dot	2015-03-02 11:54	1.8K
	MSAFilePositionByIndex.dot.md5	2015-03-02 11:57	32
	MSAFilePositionByKey.dot	2015-03-02 11:55	1.8K
	MSAFilePositionByKey.dot.md5	2015-03-02 11:57	32
	MSAFileRead.dot	2015-03-02 11:54	2.9K
	MSAFileRead.dot.md5	2015-03-02 11:57	32
	MSAFileRewind.dot	2015-03-02 11:54	732
	MSAFileRewind.dot.md5	2015-03-02 11:57	32
	MSAFileWrite.dot	2015-03-02 11:55	3.1K
	MSAFileWrite.dot.md5	2015-03-02 11:57	32
	MSAFree.dot	2015-03-02 11:55	7.0K
	MSAFree.dot.md5	2015-03-02 11:57	32
	MSAFromAINFO.dot	2015-03-02 11:55	16K
	MSAFromAINFO.dot.md5	2015-03-02 11:57	32
	MSAGetGC.dot	2015-03-02 11:55	1.3K
	MSAGetGC.dot.md5	2015-03-02 11:57	32
	MSAGetSeqAccession.dot	2015-03-02 11:55	1.0K
	MSAGetSeqAccession.dot.md5	2015-03-02 11:57	32
	MSAGetSeqDescription.dot	2015-03-02 11:55	1.0K
	MSAGetSeqDescription.dot.md5	2015-03-02 11:57	32
	MSAGetSeqSA.dot	2015-03-02 11:54	1.0K
	MSAGetSeqSA.dot.md5	2015-03-02 11:57	32
	MSAGetSeqSS.dot	2015-03-02 11:55	1.0K
	MSAGetSeqSS.dot.md5	2015-03-02 11:57	32
	MSAGetSeqidx.dot	2015-03-02 11:55	2.7K
	MSAGetSeqidx.dot.md5	2015-03-02 11:57	32
	MSAMingap.dot	2015-03-02 11:55	4.7K
	MSAMingap.dot.md5	2015-03-02 11:57	32
	MSANogap.dot	2015-03-02 11:55	4.7K
	MSANogap.dot.md5	2015-03-02 11:57	32
	MSASetSeqAccession.dot	2015-03-02 11:55	2.0K
	MSASetSeqAccession.dot.md5	2015-03-02 11:57	32
	MSASetSeqDescription.dot	2015-03-02 11:55	2.0K
	MSASetSeqDescription.dot.md5	2015-03-02 11:57	32
	MSAShorterAlignment.dot	2015-03-02 11:55	16K
	MSAShorterAlignment.dot.md5	2015-03-02 11:57	32
	MSASmallerAlignment.dot	2015-03-02 11:54	13K
	MSASmallerAlignment.dot.md5	2015-03-02 11:57	32
	MSAVerifyParse.dot	2015-03-02 11:55	14K
	MSAVerifyParse.dot.md5	2015-03-02 11:57	32
	MajorityRuleConsensus.dot	2015-03-02 11:55	6.5K
	MajorityRuleConsensus.dot.md5	2015-03-02 11:57	32
	MakeAlignedString.dot	2015-03-02 11:55	4.1K
	MakeAlignedString.dot.md5	2015-03-02 11:57	32
	MakeDealignedString.dot	2015-03-02 11:55	3.9K
	MakeDealignedString.dot.md5	2015-03-02 11:57	32
	MakeDiffMx.dot	2015-03-02 11:55	2.7K
	MakeDiffMx.dot.md5	2015-03-02 11:57	32
	MakeIdentityMx.dot	2015-03-02 11:55	2.6K
	MakeIdentityMx.dot.md5	2015-03-02 11:57	32
	MasterTraceFromMap.dot	2015-03-02 11:54	8.6K
	MasterTraceFromMap.dot.md5	2015-03-02 11:57	32
	MergeTraceArrays.dot	2015-03-02 11:55	2.8K
	MergeTraceArrays.dot.md5	2015-03-02 11:57	32
	MingapAlignment.dot	2015-03-02 11:55	8.5K
	MingapAlignment.dot.md5	2015-03-02 11:57	32
	P7AllocPrior.dot	2015-03-02 11:54	292
	P7AllocPrior.dot.md5	2015-03-02 11:57	32
	P7AllocTrace.dot	2015-03-02 11:55	1.9K
	P7AllocTrace.dot.md5	2015-03-02 11:57	32
	P7Backward.dot	2015-03-02 11:55	23K
	P7Backward.dot.md5	2015-03-02 11:57	32
	P7CountSymbol.dot	2015-03-02 11:54	2.0K
	P7CountSymbol.dot.md5	2015-03-02 11:57	32
	P7DefaultNullModel.dot	2015-03-02 11:55	2.7K
	P7DefaultNullModel.dot.md5	2015-03-02 11:57	32
	P7DefaultPrior.dot	2015-03-02 11:54	1.1K
	P7DefaultPrior.dot.md5	2015-03-02 11:57	32
	P7EmitterPosterior.dot	2015-03-02 11:54	16K
	P7EmitterPosterior.dot.md5	2015-03-02 11:57	32
	P7Fastmodelmaker.dot	2015-03-02 11:54	5.9K
	P7Fastmodelmaker.dot.md5	2015-03-02 11:57	32
	P7FillOptimalAccuracy.dot	2015-03-02 11:55	28K
	P7FillOptimalAccuracy.dot.md5	2015-03-02 11:57	32
	P7Forward.dot	2015-03-02 11:54	23K
	P7Forward.dot.md5	2015-03-02 11:57	32
	P7FreePrior.dot	2015-03-02 11:55	292
	P7FreePrior.dot.md5	2015-03-02 11:57	32
	P7FreeTrace.dot	2015-03-02 11:54	894
	P7FreeTrace.dot.md5	2015-03-02 11:57	32
	P7Handmodelmaker.dot	2015-03-02 11:55	4.6K
	P7Handmodelmaker.dot.md5	2015-03-02 11:57	32
	P7LaplacePrior.dot	2015-03-02 11:55	2.8K
	P7LaplacePrior.dot.md5	2015-03-02 11:57	32
	P7Logoddsify.dot	2015-03-02 11:54	26K
	P7Logoddsify.dot.md5	2015-03-02 11:57	32
	P7Maxmodelmaker.dot	2015-03-02 11:54	47K
	P7Maxmodelmaker.dot.md5	2015-03-02 11:57	32
	P7OptimalAccuracy.dot	2015-03-02 11:55	1.7K
	P7OptimalAccuracy.dot.md5	2015-03-02 11:57	32
	P7OptimalAccuracyTrace.dot	2015-03-02 11:54	38K
	P7OptimalAccuracyTrace.dot.md5	2015-03-02 11:57	32
	P7ParsingViterbi.dot	2015-03-02 11:55	46K
	P7ParsingViterbi.dot.md5	2015-03-02 11:57	32
	P7PrintPrior.dot	2015-03-02 11:54	8.5K
	P7PrintPrior.dot.md5	2015-03-02 11:57	32
	P7PrintTrace.dot	2015-03-02 11:55	14K
	P7PrintTrace.dot.md5	2015-03-02 11:57	32
	P7PriorifyEmissionVector.dot	2015-03-02 11:55	8.7K
	P7PriorifyEmissionVector.dot.md5	2015-03-02 11:57	32
	P7PriorifyHMM.dot	2015-03-02 11:54	12K
	P7PriorifyHMM.dot.md5	2015-03-02 11:57	32
	P7PriorifyTransitionVector.dot	2015-03-02 11:55	12K
	P7PriorifyTransitionVector.dot.md5	2015-03-02 11:57	32
	P7ReadNullModel.dot	2015-03-02 11:55	5.9K
	P7ReadNullModel.dot.md5	2015-03-02 11:57	32
	P7ReadPrior.dot	2015-03-02 11:55	13K
	P7ReadPrior.dot.md5	2015-03-02 11:57	32
	P7ReallocTrace.dot	2015-03-02 11:55	1.6K
	P7ReallocTrace.dot.md5	2015-03-02 11:57	32
	P7ReverseTrace.dot	2015-03-02 11:55	4.2K
	P7ReverseTrace.dot.md5	2015-03-02 11:57	32
	P7SmallViterbi.dot	2015-03-02 11:55	21K
	P7SmallViterbi.dot.md5	2015-03-02 11:57	32
	P7SmallViterbiSize.dot	2015-03-02 11:55	1.4K
	P7SmallViterbiSize.dot.md5	2015-03-02 11:57	32
	P7TraceCount.dot	2015-03-02 11:54	23K
	P7TraceCount.dot.md5	2015-03-02 11:57	32
	P7TraceScore.dot	2015-03-02 11:54	3.9K
	P7TraceScore.dot.md5	2015-03-02 11:57	32
	P7Traces2Alignment.dot	2015-03-02 11:55	34K
	P7Traces2Alignment.dot.md5	2015-03-02 11:57	32
	P7Viterbi.dot	2015-03-02 11:55	34K
	P7Viterbi.dot.md5	2015-03-02 11:57	32
	P7ViterbiAlignAlignment.dot	2015-03-02 11:55	60K
	P7ViterbiAlignAlignment.dot.md5	2015-03-02 11:57	32
	P7ViterbiSize.dot	2015-03-02 11:54	1.7K
	P7ViterbiSize.dot.md5	2015-03-02 11:57	32
	P7ViterbiTrace.dot	2015-03-02 11:54	47K
	P7ViterbiTrace.dot.md5	2015-03-02 11:57	32
	P7WeeViterbi.dot	2015-03-02 11:55	38K
	P7WeeViterbi.dot.md5	2015-03-02 11:57	32
	P7WeeViterbiSize.dot	2015-03-02 11:55	1.9K
	P7WeeViterbiSize.dot.md5	2015-03-02 11:57	32
	P9AllocHMM.dot	2015-03-02 11:55	2.0K
	P9AllocHMM.dot.md5	2015-03-02 11:57	32
	P9DefaultNullModel.dot	2015-03-02 11:54	2.5K
	P9DefaultNullModel.dot.md5	2015-03-02 11:57	32
	P9FreeHMM.dot	2015-03-02 11:54	2.1K
	P9FreeHMM.dot.md5	2015-03-02 11:57	32
	P9Renormalize.dot	2015-03-02 11:55	2.5K
	P9Renormalize.dot.md5	2015-03-02 11:57	32
	P9ZeroHMM.dot	2015-03-02 11:55	3.8K
	P9ZeroHMM.dot.md5	2015-03-02 11:57	32
	PAMPrior.dot	2015-03-02 11:55	8.4K
	PAMPrior.dot.md5	2015-03-02 11:57	32
	PValue.dot	2015-03-02 11:54	3.9K
	PValue.dot.md5	2015-03-02 11:57	32
	P_PvecGivenDirichlet.dot	2015-03-02 11:55	2.7K
	P_PvecGivenDirichlet.dot.md5	2015-03-02 11:57	32
	PairwiseIdentity.dot	2015-03-02 11:54	5.8K
	PairwiseIdentity.dot.md5	2015-03-02 11:57	32
	Panic.dot	2015-03-02 11:55	454
	Panic.dot.md5	2015-03-02 11:57	32
	ParsePAMFile.dot	2015-03-02 11:55	15K
	ParsePAMFile.dot.md5	2015-03-02 11:57	32
	Plan7ComlogAppend.dot	2015-03-02 11:54	4.3K
	Plan7ComlogAppend.dot.md5	2015-03-02 11:57	32
	Plan7ESTConfig.dot	2015-03-02 11:54	9.5K
	Plan7ESTConfig.dot.md5	2015-03-02 11:57	32
	Plan7ESTViterbi.dot	2015-03-02 11:55	51K
	Plan7ESTViterbi.dot.md5	2015-03-02 11:57	32
	Plan7FSConfig.dot	2015-03-02 11:54	6.0K
	Plan7FSConfig.dot.md5	2015-03-02 11:57	32
	Plan7GlobalConfig.dot	2015-03-02 11:54	4.6K
	Plan7GlobalConfig.dot.md5	2015-03-02 11:57	32
	Plan7LSConfig.dot	2015-03-02 11:55	4.6K
	Plan7LSConfig.dot.md5	2015-03-02 11:57	32
	Plan7NakedConfig.dot	2015-03-02 11:54	4.4K
	Plan7NakedConfig.dot.md5	2015-03-02 11:57	32
	Plan7Renormalize.dot	2015-03-02 11:55	7.1K
	Plan7Renormalize.dot.md5	2015-03-02 11:57	32
	Plan7RenormalizeExits.dot	2015-03-02 11:55	1.8K
	Plan7RenormalizeExits.dot.md5	2015-03-02 11:57	32
	Plan7SWConfig.dot	2015-03-02 11:55	5.9K
	Plan7SWConfig.dot.md5	2015-03-02 11:57	32
	Plan7SetAccession.dot	2015-03-02 11:55	1.0K
	Plan7SetAccession.dot.md5	2015-03-02 11:57	32
	Plan7SetCtime.dot	2015-03-02 11:55	894
	Plan7SetCtime.dot.md5	2015-03-02 11:57	32
	Plan7SetDescription.dot	2015-03-02 11:54	1.0K
	Plan7SetDescription.dot.md5	2015-03-02 11:57	32
	Plan7SetName.dot	2015-03-02 11:55	813
	Plan7SetName.dot.md5	2015-03-02 11:57	32
	Plan7SetNullModel.dot	2015-03-02 11:55	1.3K
	Plan7SetNullModel.dot.md5	2015-03-02 11:57	32
	Plan9toPlan7.dot	2015-03-02 11:55	12K
	Plan9toPlan7.dot.md5	2015-03-02 11:57	32
	PopIntStack.dot	2015-03-02 11:55	1.3K
	PopIntStack.dot.md5	2015-03-02 11:57	32
	PositionBasedWeights.dot	2015-03-02 11:55	6.8K
	PositionBasedWeights.dot.md5	2015-03-02 11:57	32
	PostalCode.dot	2015-03-02 11:54	6.3K
	PostalCode.dot.md5	2015-03-02 11:57	32
	PostprocessSignificantHit.dot	2015-03-02 11:54	18K
	PostprocessSignificantHit.dot.md5	2015-03-02 11:57	32
	PrintASCIIHistogram.dot	2015-03-02 11:54	26K
	PrintASCIIHistogram.dot.md5	2015-03-02 11:57	32
	PrintFancyAli.dot	2015-03-02 11:54	9.6K
	PrintFancyAli.dot.md5	2015-03-02 11:57	32
	PrintIscore.dot	2015-03-02 11:54	1.2K
	PrintIscore.dot.md5	2015-03-02 11:57	32
	PrintNewHampshireTree.dot	2015-03-02 11:54	7.0K
	PrintNewHampshireTree.dot.md5	2015-03-02 11:57	32
	PrintPhylo.dot	2015-03-02 11:55	5.9K
	PrintPhylo.dot.md5	2015-03-02 11:57	32
	PrintPlan7Stats.dot	2015-03-02 11:54	6.5K
	PrintPlan7Stats.dot.md5	2015-03-02 11:57	32
	PrintTransition.dot	2015-03-02 11:54	20K
	PrintTransition.dot.md5	2015-03-02 11:57	32
	PrintXMGRDistribution.dot	2015-03-02 11:55	3.9K
	PrintXMGRDistribution.dot.md5	2015-03-02 11:57	32
	PrintXMGRHistogram.dot	2015-03-02 11:55	4.2K
	PrintXMGRHistogram.dot.md5	2015-03-02 11:57	32
	PrintXMGRRegressionLine.dot	2015-03-02 11:54	4.5K
	PrintXMGRRegressionLine.dot.md5	2015-03-02 11:57	32
	Prob2Score.dot	2015-03-02 11:54	651
	Prob2Score.dot.md5	2015-03-02 11:57	32
	PushIntStack.dot	2015-03-02 11:55	1.3K
	PushIntStack.dot.md5	2015-03-02 11:57	32
	QRNAShuffle.dot	2015-03-02 11:55	25K
	QRNAShuffle.dot.md5	2015-03-02 11:57	32
	RandomAlignment.dot	2015-03-02 11:54	18K
	RandomAlignment.dot.md5	2015-03-02 11:57	32
	RandomSequence.dot	2015-03-02 11:55	1.7K
	RandomSequence.dot.md5	2015-03-02 11:57	32
	ReadA2M.dot	2015-03-02 11:55	6.9K
	ReadA2M.dot.md5	2015-03-02 11:57	32
	ReadClustal.dot	2015-03-02 11:55	7.1K
	ReadClustal.dot.md5	2015-03-02 11:57	32
	ReadMSF.dot	2015-03-02 11:55	21K
	ReadMSF.dot.md5	2015-03-02 11:57	32
	ReadPhylip.dot	2015-03-02 11:55	8.8K
	ReadPhylip.dot.md5	2015-03-02 11:57	32
	ReadSeq.dot	2015-03-02 11:55	15K
	ReadSeq.dot.md5	2015-03-02 11:57	32
	ReadStockholm.dot	2015-03-02 11:54	10K
	ReadStockholm.dot.md5	2015-03-02 11:57	32
	RegisterHit.dot	2015-03-02 11:55	4.7K
	RegisterHit.dot.md5	2015-03-02 11:57	32
	ResizePlan7Matrix.dot	2015-03-02 11:55	8.5K
	ResizePlan7Matrix.dot.md5	2015-03-02 11:57	32
	ReverseIntStack.dot	2015-03-02 11:55	1.6K
	ReverseIntStack.dot.md5	2015-03-02 11:57	32
	SAMizeAlignment.dot	2015-03-02 11:54	8.0K
	SAMizeAlignment.dot.md5	2015-03-02 11:57	32
	SAMizeAlignmentByGapFrac.dot	2015-03-02 11:55	9.4K
	SAMizeAlignmentByGapFrac.dot.md5	2015-03-02 11:57	32
	SSIAddFileToIndex.dot	2015-03-02 11:55	6.1K
	SSIAddFileToIndex.dot.md5	2015-03-02 11:57	32
	SSIAddPrimaryKeyToIndex.dot	2015-03-02 11:55	8.4K
	SSIAddPrimaryKeyToIndex.dot.md5	2015-03-02 11:57	32
	SSIAddSecondaryKeyToIndex.dot	2015-03-02 11:54	5.2K
	SSIAddSecondaryKeyToIndex.dot.md5	2015-03-02 11:57	32
	SSIClose.dot	2015-03-02 11:54	1.0K
	SSIClose.dot.md5	2015-03-02 11:57	32
	SSICreateIndex.dot	2015-03-02 11:55	7.7K
	SSICreateIndex.dot.md5	2015-03-02 11:57	32
	SSIErrorString.dot	2015-03-02 11:55	3.9K
	SSIErrorString.dot.md5	2015-03-02 11:57	32
	SSIFileInfo.dot	2015-03-02 11:55	1.3K
	SSIFileInfo.dot.md5	2015-03-02 11:57	32
	SSIForceExternalSort.dot	2015-03-02 11:55	570
	SSIForceExternalSort.dot.md5	2015-03-02 11:57	32
	SSIFreeIndex.dot	2015-03-02 11:55	6.5K
	SSIFreeIndex.dot.md5	2015-03-02 11:57	32
	SSIGetFilePosition.dot	2015-03-02 11:54	1.8K
	SSIGetFilePosition.dot.md5	2015-03-02 11:57	32
	SSIGetOffsetByName.dot	2015-03-02 11:54	5.5K
	SSIGetOffsetByName.dot.md5	2015-03-02 11:57	32
	SSIGetOffsetByNumber.dot	2015-03-02 11:55	3.5K
	SSIGetOffsetByNumber.dot.md5	2015-03-02 11:57	32
	SSIGetSubseqOffset.dot	2015-03-02 11:55	8.8K
	SSIGetSubseqOffset.dot.md5	2015-03-02 11:57	32
	SSIOpen.dot	2015-03-02 11:54	1.8K
	SSIOpen.dot.md5	2015-03-02 11:57	32
	SSIRecommendMode.dot	2015-03-02 11:55	292
	SSIRecommendMode.dot.md5	2015-03-02 11:57	32
	SSISetFileForSubseq.dot	2015-03-02 11:55	1.8K
	SSISetFileForSubseq.dot.md5	2015-03-02 11:57	32
	SSISetFilePosition.dot	2015-03-02 11:54	1.1K
	SSISetFilePosition.dot.md5	2015-03-02 11:57	32
	SSIWriteIndex.dot	2015-03-02 11:55	35K
	SSIWriteIndex.dot.md5	2015-03-02 11:57	32
	SampleAlignment.dot	2015-03-02 11:55	4.7K
	SampleAlignment.dot.md5	2015-03-02 11:57	32
	SampleCountvector.dot	2015-03-02 11:55	1.3K
	SampleCountvector.dot.md5	2015-03-02 11:57	32
	SampleDirichlet.dot	2015-03-02 11:55	1.3K
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	SampleGamma.dot	2015-03-02 11:55	6.3K
	SampleGamma.dot.md5	2015-03-02 11:57	32
	SantaCruzCorrection.dot	2015-03-02 11:55	292
	SantaCruzCorrection.dot.md5	2015-03-02 11:57	32
	Score2Prob.dot	2015-03-02 11:54	894
	Score2Prob.dot.md5	2015-03-02 11:57	32
	Scorify.dot	2015-03-02 11:54	373
	Scorify.dot.md5	2015-03-02 11:57	32
	SeqfileClose.dot	2015-03-02 11:55	2.3K
	SeqfileClose.dot.md5	2015-03-02 11:57	32
	SeqfileFormat.dot	2015-03-02 11:54	22K
	SeqfileFormat.dot.md5	2015-03-02 11:57	32
	SeqfileGetLine.dot	2015-03-02 11:54	1.7K
	SeqfileGetLine.dot.md5	2015-03-02 11:57	32
	SeqfileLineParameters.dot	2015-03-02 11:55	1.6K
	SeqfileLineParameters.dot.md5	2015-03-02 11:57	32
	SeqfileOpen.dot	2015-03-02 11:55	535
	SeqfileOpen.dot.md5	2015-03-02 11:57	32
	SeqfileOpenForIndexing.dot	2015-03-02 11:55	535
	SeqfileOpenForIndexing.dot.md5	2015-03-02 11:57	32
	SeqfilePosition.dot	2015-03-02 11:55	1.2K
	SeqfilePosition.dot.md5	2015-03-02 11:57	32
	SeqfileRewind.dot	2015-03-02 11:55	732
	SeqfileRewind.dot.md5	2015-03-02 11:57	32
	SeqinfoCopy.dot	2015-03-02 11:54	6.0K
	SeqinfoCopy.dot.md5	2015-03-02 11:57	32
	Seqtype.dot	2015-03-02 11:55	6.3K
	Seqtype.dot.md5	2015-03-02 11:57	32
	SetAlphabet.dot	2015-03-02 11:55	9.5K
	SetAlphabet.dot.md5	2015-03-02 11:57	32
	SetAutocuts.dot	2015-03-02 11:54	4.0K
	SetAutocuts.dot.md5	2015-03-02 11:57	32
	SetSeqinfoString.dot	2015-03-02 11:54	14K
	SetSeqinfoString.dot.md5	2015-03-02 11:57	32
	ShadowTrace.dot	2015-03-02 11:55	22K
	ShadowTrace.dot.md5	2015-03-02 11:57	32
	SingleLinkCluster.dot	2015-03-02 11:54	7.9K
	SingleLinkCluster.dot.md5	2015-03-02 11:57	32
	SqdBanner.dot	2015-03-02 11:55	1.4K
	SqdBanner.dot.md5	2015-03-02 11:57	32
	SqdClean.dot	2015-03-02 11:55	1.5K
	SqdClean.dot.md5	2015-03-02 11:57	32
	StateOccupancy.dot	2015-03-02 11:54	8.6K
	StateOccupancy.dot.md5	2015-03-02 11:57	32
	Statetype.dot	2015-03-02 11:55	2.5K
	Statetype.dot.md5	2015-03-02 11:57	32
	StrDPShuffle.dot	2015-03-02 11:55	22K
	StrDPShuffle.dot.md5	2015-03-02 11:57	32
	StrMarkov0.dot	2015-03-02 11:55	3.9K
	StrMarkov0.dot.md5	2015-03-02 11:57	32
	StrMarkov1.dot	2015-03-02 11:54	6.9K
	StrMarkov1.dot.md5	2015-03-02 11:57	32
	StrRegionalShuffle.dot	2015-03-02 11:55	4.1K
	StrRegionalShuffle.dot.md5	2015-03-02 11:57	32
	StrReverse.dot	2015-03-02 11:55	3.2K
	StrReverse.dot.md5	2015-03-02 11:57	32
	StrShuffle.dot	2015-03-02 11:55	2.6K
	StrShuffle.dot.md5	2015-03-02 11:57	32
	Strdelete.dot	2015-03-02 11:54	1.1K
	Strdelete.dot.md5	2015-03-02 11:57	32
	Strdup.dot	2015-03-02 11:54	1.3K
	Strdup.dot.md5	2015-03-02 11:57	32
	StringChop.dot	2015-03-02 11:54	1.4K
	StringChop.dot.md5	2015-03-02 11:57	32
	Strinsert.dot	2015-03-02 11:55	1.6K
	Strinsert.dot.md5	2015-03-02 11:57	32
	Strparse.dot	2015-03-02 11:55	5.8K
	Strparse.dot.md5	2015-03-02 11:57	32
	SymbolIndex.dot	2015-03-02 11:54	1.0K
	SymbolIndex.dot.md5	2015-03-02 11:57	32
	ToDNA.dot	2015-03-02 11:55	1.5K
	ToDNA.dot.md5	2015-03-02 11:57	32
	ToIUPAC.dot	2015-03-02 11:55	3.1K
	ToIUPAC.dot.md5	2015-03-02 11:57	32
	ToRNA.dot	2015-03-02 11:55	1.5K
	ToRNA.dot.md5	2015-03-02 11:57	32
	TophitsMaxName.dot	2015-03-02 11:55	1.8K
	TophitsMaxName.dot.md5	2015-03-02 11:57	32
	TophitsReport.dot	2015-03-02 11:55	9.8K
	TophitsReport.dot.md5	2015-03-02 11:57	32
	TraceCompare.dot	2015-03-02 11:55	2.8K
	TraceCompare.dot.md5	2015-03-02 11:57	32
	TraceDecompose.dot	2015-03-02 11:55	12K
	TraceDecompose.dot.md5	2015-03-02 11:57	32
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	TraceDomainNumber.dot.md5	2015-03-02 11:57	32
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	TraceScoreCorrection.dot.md5	2015-03-02 11:57	32
	TraceSet.dot	2015-03-02 11:55	940
	TraceSet.dot.md5	2015-03-02 11:57	32
	TraceSimpleBounds.dot	2015-03-02 11:55	7.0K
	TraceSimpleBounds.dot.md5	2015-03-02 11:57	32
	TraceVerify.dot	2015-03-02 11:55	24K
	TraceVerify.dot.md5	2015-03-02 11:57	32
	TransitionScoreLookup.dot	2015-03-02 11:54	13K
	TransitionScoreLookup.dot.md5	2015-03-02 11:57	32
	Translate.dot	2015-03-02 11:55	7.1K
	Translate.dot.md5	2015-03-02 11:57	32
	UnfitHistogram.dot	2015-03-02 11:55	894
	UnfitHistogram.dot.md5	2015-03-02 11:57	32
	VoronoiWeights.dot	2015-03-02 11:54	23K
	VoronoiWeights.dot.md5	2015-03-02 11:57	32
	Warn.dot	2015-03-02 11:54	1.2K
	Warn.dot.md5	2015-03-02 11:57	32
	WeightedLinefit.dot	2015-03-02 11:55	5.5K
	WeightedLinefit.dot.md5	2015-03-02 11:57	32
	WriteA2M.dot	2015-03-02 11:54	3.6K
	WriteA2M.dot.md5	2015-03-02 11:57	32
	WriteAscHMM.dot	2015-03-02 11:54	23K
	WriteAscHMM.dot.md5	2015-03-02 11:57	32
	WriteBinHMM.dot	2015-03-02 11:54	15K
	WriteBinHMM.dot.md5	2015-03-02 11:57	32
	WriteClustal.dot	2015-03-02 11:54	4.5K
	WriteClustal.dot.md5	2015-03-02 11:57	32
	WriteMSF.dot	2015-03-02 11:55	26K
	WriteMSF.dot.md5	2015-03-02 11:57	32
	WritePairwiseAlignment.dot	2015-03-02 11:55	17K
	WritePairwiseAlignment.dot.md5	2015-03-02 11:57	32
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	WritePhylip.dot.md5	2015-03-02 11:57	32
	WriteProfile.dot	2015-03-02 11:54	24K
	WriteProfile.dot.md5	2015-03-02 11:57	32
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	WriteSimpleFASTA.dot.md5	2015-03-02 11:57	32
	WriteStockholm.dot	2015-03-02 11:54	454
	WriteStockholm.dot.md5	2015-03-02 11:57	32
	WriteStockholmOneBlock.dot	2015-03-02 11:55	454
	WriteStockholmOneBlock.dot.md5	2015-03-02 11:57	32
	XNU.dot	2015-03-02 11:55	13K
	XNU.dot.md5	2015-03-02 11:57	32
	ZeroPlan7.dot	2015-03-02 11:54	4.2K
	ZeroPlan7.dot.md5	2015-03-02 11:57	32
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	activate_external_sort.dot.md5	2015-03-02 11:57	32
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	actually_write_stockholm.dot.md5	2015-03-02 11:57	32
	addseq.dot	2015-03-02 11:54	10K
	addseq.dot.md5	2015-03-02 11:57	32
	annotate_model.dot	2015-03-02 11:55	25K
	annotate_model.dot.md5	2015-03-02 11:57	32
	ascii2prob.dot	2015-03-02 11:55	732
	ascii2prob.dot.md5	2015-03-02 11:57	32
	binary_search.dot	2015-03-02 11:55	6.3K
	binary_search.dot.md5	2015-03-02 11:57	32
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	build_cij.dot.md5	2015-03-02 11:57	32
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	byteswap.dot.md5	2015-03-02 11:57	32
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	clear_ssifile.dot.md5	2015-03-02 11:57	32
	coded_revcomp.dot	2015-03-02 11:55	3.6K
	coded_revcomp.dot.md5	2015-03-02 11:57	32
	compare_lists.dot	2015-03-02 11:55	3.5K
	compare_lists.dot.md5	2015-03-02 11:57	32
	current_index_size.dot	2015-03-02 11:55	2.3K
	current_index_size.dot.md5	2015-03-02 11:57	32
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	default_amino_prior.dot.md5	2015-03-02 11:57	32
	default_nucleic_prior.dot	2015-03-02 11:55	4.7K
	default_nucleic_prior.dot.md5	2015-03-02 11:57	32
	downweight.dot	2015-03-02 11:54	7.0K
	downweight.dot.md5	2015-03-02 11:57	32
	endEMBL.dot	2015-03-02 11:55	697
	endEMBL.dot.md5	2015-03-02 11:57	32
	endGB.dot	2015-03-02 11:55	859
	endGB.dot.md5	2015-03-02 11:57	32
	endGCGdata.dot	2015-03-02 11:55	535
	endGCGdata.dot.md5	2015-03-02 11:57	32
	endIG.dot	2015-03-02 11:55	859
	endIG.dot.md5	2015-03-02 11:57	32
	endPIR.dot	2015-03-02 11:55	1.3K
	endPIR.dot.md5	2015-03-02 11:57	32
	endPearson.dot	2015-03-02 11:54	535
	endPearson.dot.md5	2015-03-02 11:57	32
	endStrider.dot	2015-03-02 11:55	616
	endStrider.dot.md5	2015-03-02 11:57	32
	endZuker.dot	2015-03-02 11:54	535
	endZuker.dot.md5	2015-03-02 11:57	32
	estimate_model_length.dot	2015-03-02 11:55	1.7K
	estimate_model_length.dot.md5	2015-03-02 11:57	32
	fake_tracebacks.dot	2015-03-02 11:54	26K
	fake_tracebacks.dot.md5	2015-03-02 11:57	32
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	gki_alloc.dot	2015-03-02 11:55	3.0K
	gki_alloc.dot.md5	2015-03-02 11:57	32
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	gki_hashvalue.dot.md5	2015-03-02 11:57	32
	gki_upsize.dot	2015-03-02 11:55	4.1K
	gki_upsize.dot.md5	2015-03-02 11:57	32
	gsi_keysorter.dot	2015-03-02 11:55	859
	gsi_keysorter.dot.md5	2015-03-02 11:57	32
	hit_comparison.dot	2015-03-02 11:54	1.5K
	hit_comparison.dot.md5	2015-03-02 11:57	32
	hmmcalibrate.dot	2015-03-02 11:55	29K
	hmmcalibrate.dot.md5	2015-03-02 11:57	32
	indexfile_position.dot	2015-03-02 11:54	2.5K
	indexfile_position.dot.md5	2015-03-02 11:57	32
	init_ilogsum.dot	2015-03-02 11:54	1.0K
	init_ilogsum.dot.md5	2015-03-02 11:57	32
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	main.dot	2015-03-02 11:54	44K
	main.dot.md5	2015-03-02 11:57	32
	main_loop_pvm.dot	2015-03-02 11:55	292
	main_loop_pvm.dot.md5	2015-03-02 11:57	32
	main_loop_serial.dot	2015-03-02 11:55	6.8K
	main_loop_serial.dot.md5	2015-03-02 11:57	32
	main_loop_threaded.dot	2015-03-02 11:54	292
	main_loop_threaded.dot.md5	2015-03-02 11:57	32
	make_alilist.dot	2015-03-02 11:55	6.2K
	make_alilist.dot.md5	2015-03-02 11:57	32
	make_ref_alilist.dot	2015-03-02 11:54	11K
	make_ref_alilist.dot.md5	2015-03-02 11:57	32
	matassign2hmm.dot	2015-03-02 11:55	11K
	matassign2hmm.dot.md5	2015-03-02 11:57	32
	multiline.dot	2015-03-02 11:55	2.0K
	multiline.dot.md5	2015-03-02 11:57	32
	parse_comment.dot	2015-03-02 11:55	2.0K
	parse_comment.dot.md5	2015-03-02 11:57	32
	parse_gc.dot	2015-03-02 11:55	4.8K
	parse_gc.dot.md5	2015-03-02 11:57	32
	parse_gf.dot	2015-03-02 11:55	13K
	parse_gf.dot.md5	2015-03-02 11:57	32
	parse_gr.dot	2015-03-02 11:55	10K
	parse_gr.dot.md5	2015-03-02 11:57	32
	parse_gs.dot	2015-03-02 11:55	6.7K
	parse_gs.dot.md5	2015-03-02 11:57	32
	parse_pkey_info.dot	2015-03-02 11:54	5.0K
	parse_pkey_info.dot.md5	2015-03-02 11:57	32
	parse_sequence.dot	2015-03-02 11:55	3.2K
	parse_sequence.dot.md5	2015-03-02 11:57	32
	parse_skey_info.dot	2015-03-02 11:54	2.1K
	parse_skey_info.dot.md5	2015-03-02 11:57	32
	pkeysort.dot	2015-03-02 11:55	859
	pkeysort.dot.md5	2015-03-02 11:57	32
	print_matassign.dot	2015-03-02 11:55	3.3K
	print_matassign.dot.md5	2015-03-02 11:57	32
	prob2ascii.dot	2015-03-02 11:54	1.0K
	prob2ascii.dot.md5	2015-03-02 11:57	32
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	readGCGdata.dot.md5	2015-03-02 11:57	32
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	readIG.dot.md5	2015-03-02 11:57	32
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	readPIR.dot.md5	2015-03-02 11:57	32
	readPearson.dot	2015-03-02 11:55	3.6K
	readPearson.dot.md5	2015-03-02 11:57	32
	readStrider.dot	2015-03-02 11:54	2.8K
	readStrider.dot.md5	2015-03-02 11:57	32
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	readZuker.dot.md5	2015-03-02 11:57	32
	read_asc10hmm.dot	2015-03-02 11:54	373
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	read_asc19hmm.dot.md5	2015-03-02 11:57	32
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	read_asc20hmm.dot.md5	2015-03-02 11:57	32
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	read_bin11hmm.dot.md5	2015-03-02 11:57	32
	read_bin17hmm.dot	2015-03-02 11:54	2.8K
	read_bin17hmm.dot.md5	2015-03-02 11:57	32
	read_bin19hmm.dot	2015-03-02 11:55	2.8K
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	read_bin20hmm.dot	2015-03-02 11:55	35K
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	read_i32.dot.md5	2015-03-02 11:57	32
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	regc.dot	2015-03-02 11:54	732
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	sqd_regcomp.dot.md5	2015-03-02 11:57	32
	sqd_regerror.dot	2015-03-02 11:55	535
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	sqd_regexec.dot.md5	2015-03-02 11:57	32
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	sqd_regsub.dot.md5	2015-03-02 11:57	32
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	sre_fgets.dot.md5	2015-03-02 11:57	32
	sre_hton16.dot	2015-03-02 11:55	292
	sre_hton16.dot.md5	2015-03-02 11:57	32
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	sre_malloc.dot.md5	2015-03-02 11:57	32
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	sre_random.dot.md5	2015-03-02 11:57	32
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	sre_strcat.dot.md5	2015-03-02 11:57	32
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	sre_strdup.dot.md5	2015-03-02 11:57	32
	sre_strncpy.dot	2015-03-02 11:55	778
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	sre_strtok.dot.md5	2015-03-02 11:57	32
	sre_tolower.dot	2015-03-02 11:55	732
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	write_i32.dot	2015-03-02 11:54	1.0K
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	write_i64.dot	2015-03-02 11:54	1.0K
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	write_offset.dot.md5	2015-03-02 11:57	32