(lnd_init_mct) :CLM land model initialization ccsm4_0 Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in Successfully initialized run control settings define run: source = Community Land Model CLM3.6 model_version = ccsm4_0 run type = restart case title = UNSET username = matsbn hostname = hexagon input data files: PFT physiology = /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c100226 surface data = /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc flndtopo not set atm grid data = /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc land frac data = /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc fatmtopo not set nitrogen deposition data = /work/shared/noresm/inputdata/lnd/clm2/ndepdata/ndep_clm_simyr1850_1.9x2.5_c091106.nc NOT using dynamic input data for nitrogen deposition snow optical properties file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc snow aging parameters file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc aerosol deposition file = /work/shared/noresm/inputdata/lnd/clm2/snicardata/aerosoldep_monthly_1850_mean_1.9x2.5_c090421.nc restart data = set by restart pointer file file atmospheric forcing data is from sequential ccsm model RTM river data = /work/shared/noresm/inputdata/lnd/clm2/rtmdata/rdirc.05.061026 Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd Large file support for output files is ON initial datasets will not be produced model physics parameters: flag for random perturbation test is not set CO2 volume mixing ratio (umol/mol) = 284.7000000000000 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban traffic flux = F river runoff calculation performed only every 6 nsteps restart warning: Namelist not checked for agreement with initial run. Namelist should not differ except for ending time step and run type maxpatch_pft = 17 allocate_all_vegpfts = T nsegspc = 20 history/PIO parameters: hist_pioflag = F ncd_lowmem2d = T ncd_pio_def = F ncd_pio_UseRearranger = T ncd_pio_UseBoxRearr = F ncd_pio_SerialCDF = F ncd_pio_IODOF_rootonly = F ncd_pio_DebugLevel = 2 ncd_pio_num_iotasks = 999999999 Attempting to read alatlon from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc (GETFIL): attempting to find local file fracdata_1.9x2.5_gx1v6_c090206.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.00000000000000 358.7500000000000 -90.00000000000000 -1.250000000000000 latlon_check lonc = 0.000000000000000 357.5000000000000 latlon_check latc = -90.00000000000000 90.00000000000000 latlon_check lonw = -1.250000000000000 356.2500000000000 latlon_check lone = 1.250000000000000 358.7500000000000 latlon_check lats = -90.00000000000000 89.05263157894737 latlon_check latn = -89.05263157894737 90.00000000000000 amask size/min/max 13824 0 1 Attempting to read llatlon from fsurdat (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc latlon_check ns = 13824 latlon_check ni,nj = 144 96 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 90.00000000000000 358.7500000000000 -90.00000000000000 -1.250000000000000 latlon_check lonc = 0.000000000000000 357.5000000000000 latlon_check latc = -90.00000000000000 90.00000000000000 latlon_check lonw = -1.250000000000000 356.2500000000000 latlon_check lone = 1.250000000000000 358.7500000000000 latlon_check lats = -90.00000000000000 89.05263157894737 latlon_check latn = -89.05263157894737 90.00000000000000 initialize1: set llatlon =~ alatlon:continue 0.000000000000000 0.000000000000000 latlon_setsame: copying 144 96 atm decomp precompute anumg,nclumps,seglen1,avg_seglen,nsegspc= 5663 28 F 10.11250 20.00000 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 862 proc= 0 beg atmcell = 1 end atmcell = 203 total atmcells per proc = 203 proc= 0 atm ngseg = 862 atm nlseg = 35 proc= 0 nclumps = 1 setgatm overlapgrid,latlongrid = T T Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Decomposition Characteristics clumps per process = 1 gsMap Characteristics lnd gsmap glo num of segs = 862 atm gsmap glo num of segs = 862 Attempting to read adomain from fatmgrid (GETFIL): attempting to find local file griddata_1.9x2.5_060404.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/griddata_1.9x2.5_060404.nc check_var: variable LANDMASK is not on dataset check_var: variable PFTDATA_MASK is not on dataset Attempting to read atm landfrac from fatmlndfrc (GETFIL): attempting to find local file fracdata_1.9x2.5_gx1v6_c090206.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/griddata/fracdata_1.9x2.5_gx1v6_c090206.nc adomain status: domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = atmgrid domain_check nbeg,nend = 1 203 domain_check lonc = 0.000000000000000 357.5000000000000 domain_check latc = -90.00000000000000 72.94736842105249 domain_check mask = 1 1 domain_check frac = 4.8993744795841065E-003 1.000000000000000 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 242.1114195480868 58369.13054169642 domain_check pftm = 1 1 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 Attempting to read ldomain from fsurdat /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc check_var: variable LANDMASK is not on dataset domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 13824 domain_check ni,nj = 144 96 domain_check clmlevel = lndgrid domain_check nbeg,nend = 1 203 domain_check lonc = 0.000000000000000 357.5000000000000 domain_check latc = -90.00000000000000 72.94736842105249 domain_check mask = 1 1 domain_check frac = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 242.1114195480868 58369.13054169642 domain_check pftm = 1 1 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 initialize1: samegrids true, set ldomain =~ adomain domain_setsame: copying 144 96 Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc UrbanInput /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file pft-physiology.c100226 (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c100226 (OPNFIL): Successfully opened file /work/shared/noresm/inputdata/lnd/clm2/pftdata/pft-physiology.c100226 on unit= 12 Successfully read PFT physiological data Attempting to read surface boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Successfully read surface boundary data decompInit_glcp gsmap [l,c,p] test passes for 1 decompInit_glcp gsmap [l,c,p] test passes for 2 decompInit_glcp gsmap [l,c,p] test passes for 3 decompInit_glcp gsmap [l,c,p] test passes for 4 Atm Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 Surface Grid Characteristics longitude points = 144 latitude points = 96 total number of gridcells = 5663 total number of landunits = 8010 total number of columns = 13693 total number of pfts = 77245 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 862 lnd gsmap glo num of segs = 862 gce gsmap glo num of segs = 560 lun gsmap glo num of segs = 560 col gsmap glo num of segs = 560 pft gsmap glo num of segs = 560 proc= 0 beg atmcell = 1 end atmcell = 203 total atmcells per proc = 203 proc= 0 beg gridcell= 1 end gridcell= 203 total gridcells per proc= 203 proc= 0 beg landunit= 1 end landunit= 307 total landunits per proc= 307 proc= 0 beg column = 1 end column = 595 total columns per proc = 595 proc= 0 beg pft = 1 end pft = 2787 total pfts per proc = 2787 proc= 0 atm ngseg = 862 atm nlseg = 35 proc= 0 lnd ngseg = 862 lnd nlseg = 35 proc= 0 gce ngseg = 560 gce nlseg = 20 proc= 0 lun ngseg = 560 lun nlseg = 20 proc= 0 col ngseg = 560 col nlseg = 20 proc= 0 pft ngseg = 560 pft nlseg = 20 proc= 0 nclumps = 1 proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 203 total gridcells per clump= 203 proc= 0 clump no = 1 clump id= 1 beg landunit= 1 end landunit= 307 total landunits per clump = 307 proc= 0 clump no = 1 clump id= 1 beg column = 1 end column = 595 total columns per clump = 595 proc= 0 clump no = 1 clump id= 1 beg pft = 1 end pft = 2787 total pfts per clump = 2787 map_checkmap name = setmapsFM_a2l map_checkmap type = local map_checkmap src grid = 144 96 map_checkmap dst grid = 144 96 map_checkmap dstmo = 1 map_checkmap nwts gmin/max = 202 203 map_checkmap nwts gsum = 5663 map_checkmap src gmin/max = 1 5663 map_checkmap dst gmin/max = 1 5663 map_checkmap wts gmin/max = 1.000000000000000 1.000000000000000 map_checkmap swts gmin/max = 1.000000000000000 1.000000000000000 map_checkmap name = setmapsFM_l2a map_checkmap type = local map_checkmap src grid = 144 96 map_checkmap dst grid = 144 96 map_checkmap dstmo = 1 map_checkmap nwts gmin/max = 202 203 map_checkmap nwts gsum = 5663 map_checkmap src gmin/max = 1 5663 map_checkmap dst gmin/max = 1 5663 map_checkmap wts gmin/max = 1.000000000000000 1.000000000000000 map_checkmap swts gmin/max = 1.000000000000000 1.000000000000000 ---clm_ptrs_check: clm_ptrs_check: g index ranges - OK clm_ptrs_check: l index ranges - OK clm_ptrs_check: c index ranges - OK clm_ptrs_check: p index ranges - OK clm_ptrs_check: g mono increasing - OK clm_ptrs_check: l mono increasing - OK clm_ptrs_check: c mono increasing - OK clm_ptrs_check: p mono increasing - OK clm_ptrs_check: tree consistent - OK Attempting to initialize time invariant variables Attempting to read soil color, sand and clay boundary data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Successfully read fmax, soil color, sand and clay boundary data Attempting to read nitrogen deposition data ..... (GETFIL): attempting to find local file ndep_clm_simyr1850_1.9x2.5_c091106.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/ndepdata/ndep_clm_simyr1850_1.9x2.5_c091106.nc Successfully read nitrogen deposition data Attempting to read organic matter data ..... (GETFIL): attempting to find local file surfdata_1.9x2.5_simyr1850_c091108.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc organicrd /work/shared/noresm/inputdata/lnd/clm2/surfdata/surfdata_1.9x2.5_simyr1850_c091108.nc Expected dimensions: lsmlon= 144 lsmlat= 96 Successfully read organic matter data Attempting to read snow optical properties ..... (GETFIL): attempting to find local file snicar_optics_5bnd_c090915.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc Successfully read snow optical properties SNICAR: Mie single scatter albedos for direct-beam ice, rds=100um: 0.9999885546429754 0.9996810371988630 0.9976076056759708 0.9864979342505897 0.8636250111590581 SNICAR: Mie single scatter albedos for diffuse ice, rds=100um: 0.9999886883056436 0.9996957048670213 0.9976412614798745 0.9884245213281482 0.8740959131927010 SNICAR: Excluding OC aerosols from snow radiative transfer calculations SNICAR: Mie single scatter albedos for hydrophillic BC: 0.5159453055128044 0.4343136265364245 0.3461037659926354 0.2755229263305546 0.1385760964428150 SNICAR: Mie single scatter albedos for hydrophobic BC: 0.2876853159761815 0.1865772771252239 0.1231522370892010 8.8346288590554295E-002 4.0342156226937813E-002 SNICAR: Mie single scatter albedos for dust species 1: 0.9789110571530497 0.9941759160424509 0.9933575807622067 0.9925457513162657 0.9532915500467720 SNICAR: Mie single scatter albedos for dust species 2: 0.9437522488027930 0.9841916685994192 0.9893090639170248 0.9917939468362638 0.9829995906689125 SNICAR: Mie single scatter albedos for dust species 3: 0.9040445306460489 0.9646516296945549 0.9682758095515216 0.9725984198741066 0.9776124183298763 SNICAR: Mie single scatter albedos for dust species 4: 0.8498181953554165 0.9404603250443428 0.9483163055341691 0.9528411751178069 0.9553795281938021 Attempting to read snow aging parameters ..... (GETFIL): attempting to find local file snicar_drdt_bst_fit_60_c070416.nc (GETFIL): using /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc SnowOptics_init /work/shared/noresm/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc Successfully read snow aging properties SNICAR: snowage tau for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 6.320580029826786 SNICAR: snowage kappa for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 1.566968941895301 SNICAR: snowage dr/dt_0 for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 5.487275502742264 Successfully initialized time invariant variables Reading restart pointer file.... (OPNFIL): Successfully opened file ./rpointer.lnd on unit= 12 Reading restart data..... ------------------------------------------------------------ (GETFIL): attempting to find local file NAER1850CNOC_f19_g16_06.clm2.r.0796-01-01-00000.nc (GETFIL): using NAER1850CNOC_f19_g16_06.clm2.r.0796-01-01-00000.nc in current working directory Reading restart dataset ******** CLM Time Manager Configuration ******** Calendar type: NO_LEAP Timestep size (seconds): 1800 Start date (yr mon day tod): 1 1 1 0 Stop date (yr mon day tod): 797 1 1 0 Reference date (yr mon day tod): 1 1 1 0 Current step number: 13928401 Ending step number: 13945920 Current date (yr mon day tod): 796 1 1 1800 ************************************************ Attempting to initialize RTM rtm tracers = 2 LIQ:ICE Columns in RTM = 720 Rows in RTM = 360 read river direction data MAP_SETMAPSAR: conservation check passed global sum input field = 0.3593561283E+05 global sum output field = 0.3593561283E+05 rtm cells and basins total = 109217 24706 rtm cells per basin avg/max = 4 2467 rtm cells per pe min/max = 2689 4362 basins per pe min/max = 59 2011 total runoff cells numr = 109217 numrl = 84511 numro = 24706 rtm decomp info proc = 0 begr = 1 endr = 4362 numr = 4362 proc = 0 begrl= 1 endrl= 4159 numrl= 4159 proc = 0 begro= 1 endro= 203 numro= 203 rtm max timestep = 1867.144799932026 (sec) for cfl_scale = 0.1000000000000000 rtm act timestep ~ 10800.00000000000 Rtmini complete Successfully initialized RTM